| Code name | RE_0568 | |||
|---|---|---|---|---|
| Locus | AT4G37790 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列98.90%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0568_834bp ATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTCACCAACGCCTAATAATTACAATCATGCCAGCGAGAAATCTTCCTCCA CTGTGGACCATCGTTTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAAGACTGGTGCCGGCGCCGGCGACCAAAT TTGCCGGCAGACCTCGTCCCACAGCGGCATCTCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTCCGGCGGCGATGGAGAAGAAGAGGCG GAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCATGACGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAGCAAC AATCTGCTCTTCTCGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCCCTTGCGATACAGCTGAATCTAAGGCCTAGACAAGT TGAAGTGTGGTTCCAAAACAGGAGAGCTAGAACAAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTTAACGGATGAG AATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGTCTCAACCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTT CTTGTGAGAGACTCGGCGGTGGTGGTGTCGGAGGAGATACGACGGCGGTTGATGAAGAAACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTT CTATAACCCTTTCACTAATCCTTCTGCAGCATGT >RE_0568_translated MGLDDSCNTGLVLGLGLSPTPNNYNHASEKSSSTVDHRFIRLDPSLTLSLSGESYKIKTGAGAGDQICRQTSSHSGISSFSSGRVKREREISGGDGEEEA EETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALAIQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE NRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 829/834 (99.4%)（アミノ酸配列で275/278 (98.9%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G37 ATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTCACCAACGCCTAATAATTACAATCATGCCATCAAGAAATCTTCCTCCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : :::::::::::::::
RE_056 ATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTCACCAACGCCTAATAATTACAATCATGCCAGCGAGAAATCTTCCTCCA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G37 CTGTGGACCATCGTTTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAAGACTGGTGCCGGCGCCGGCGACCAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 CTGTGGACCATCGTTTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAAGACTGGTGCCGGCGCCGGCGACCAAAT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G37 TTGCCGGCAGACCTCGTCCCACAGCGGCATCTCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTCCGGCGGCGATGGAGAAGAAGAGGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 TTGCCGGCAGACCTCGTCCCACAGCGGCATCTCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTCCGGCGGCGATGGAGAAGAAGAGGCG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G37 GAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCATGACGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
RE_056 GAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCATGACGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAGCAAC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G37 AATCTGCTCTTCTCGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCTCTTGCGAGACAGCTGAATCTAAGGCCTAGACAAGT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: :::::::::::::::::::::::::::
RE_056 AATCTGCTCTTCTCGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCCCTTGCGATACAGCTGAATCTAAGGCCTAGACAAGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G37 TGAAGTGTGGTTCCAAAACAGGAGAGCTAGAACAAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTTAACGGATGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 TGAAGTGTGGTTCCAAAACAGGAGAGCTAGAACAAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTTAACGGATGAG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G37 AATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGTCTCAACCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 AATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGTCTCAACCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT4G37 CTTGTGAGAGACTCGGCGGTGGTGGTGTCGGAGGAGATACGACGGCGGTTGATGAAGAAACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 CTTGTGAGAGACTCGGCGGTGGTGGTGTCGGAGGAGATACGACGGCGGTTGATGAAGAAACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTT
710 720 730 740 750 760 770 780 790 800
810 820 830
AT4G37 CTATAACCCTTTCACTAATCCTTCTGCAGCATGT
::::::::::::::::::::::::::::::::::
RE_056 CTATAACCCTTTCACTAATCCTTCTGCAGCATGT
810 820 830
10 20 30 40 50 60 70 80 90 100
AT4G37 MGLDDSCNTGLVLGLGLSPTPNNYNHAIKKSSSTVDHRFIRLDPSLTLSLSGESYKIKTGAGAGDQICRQTSSHSGISSFSSGRVKREREISGGDGEEEA
::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 MGLDDSCNTGLVLGLGLSPTPNNYNHASEKSSSTVDHRFIRLDPSLTLSLSGESYKIKTGAGAGDQICRQTSSHSGISSFSSGRVKREREISGGDGEEEA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G37 EETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
RE_056 EETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALAIQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDE
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT4G37 NRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_056 NRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC
210 220 230 240 250 260 270
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