◆◆◆RE_0572 detail◆◆◆

Code name	RE_0572
Locus	AT5G11060
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0572_1179bp ATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACATCAGCCTCCTCCTCCGCCGCAACAGCAGCAGCAACAACATTTTCAAGAAT CAGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGCCTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGC CGCCGCTAACCAGTGGCTCTCACGATCCTCATCCTTCCTCCAACGAGGCAACACCGCAAACAACAACAACAACGAAACATCCGGTGACGTCATCGAAGAC GTTCCCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAAGGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACG AGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGT GGCTAAGTACTCAACTTTAGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGTACTATTGCTTTGCTCT TTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTAT CTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTT TGGTCCTCTAGTTCCCACTGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTACAAGGAGAAAATTGTG GACATAAGAGAGGAGATACTGAGGAAGAGAAGGGCTGGAAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGC CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAACAGATAAACAATTGGTCCATCAATCAAAGAAAGAGGAATTG GCATAGCAATCCATCTTCTTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCGT >RE_0572_translated MAFHNNHFNHFTDQQQHQPPPPPQQQQQQHFQESAPPNWLLRSDNNFLNLHTAASAAATSSDSPSSAAANQWLSRSSSFLQRGNTANNNNNETSGDVIED VPGGEESMIGEKKEAERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYVLLLCS FKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDEQVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIV DIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWSINQRKRNWHSNPSSSTVSKNKRRSNAGENSGRDR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1177/1179 (99.8%)（アミノ酸配列で392/393 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G11 ATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACATCAGCCTCCTCCTCCGCCGCAACAGCAGCAGCAACAACATTTTCAAGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 ATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACATCAGCCTCCTCCTCCGCCGCAACAGCAGCAGCAACAACATTTTCAAGAAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G11 CAGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGCCTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CAGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGCCTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G11 CGCCGCTAACCAGTGGCTCTCACGATCCTCATCCTTCCTCCAACGAGGCAACACCGCAAACAACAACAACAACGAAACATCCGGTGACGTCATCGAAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CGCCGCTAACCAGTGGCTCTCACGATCCTCATCCTTCCTCCAACGAGGCAACACCGCAAACAACAACAACAACGAAACATCCGGTGACGTCATCGAAGAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G11 GTTCCCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAAGGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GTTCCCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAAGGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATACG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G11 AGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G11 GGCTAAGTACTCAACTTTAGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGTACTATTGCTTTGCTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GGCTAAGTACTCAACTTTAGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGTACTATTGCTTTGCTCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G11 TTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCAATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGTAT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G11 CTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G11 TGGTCCTCTAGTTCCCACTGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTACAAGGAGAAAATTGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TGGTCCTCTAGTTCCCACTGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCAGGGTTACAAGGAGAAAATTGTG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G11 GACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGC :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GACATAAGAGAGGAGATACTGAGGAAGAGAAGGGCTGGAAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTGGC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G11 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAACAGATAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: RE_057 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAAACAGATAAACAATTGGTCCATCAATCAAAGAAAGAGGAATTG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 AT5G11 GCATAGCAATCCATCTTCTTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCGT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GCATAGCAATCCATCTTCTTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCGT 1110 1120 1130 1140 1150 1160 1170 10 20 30 40 50 60 70 80 90 100 AT5G11 MAFHNNHFNHFTDQQQHQPPPPPQQQQQQHFQESAPPNWLLRSDNNFLNLHTAASAAATSSDSPSSAAANQWLSRSSSFLQRGNTANNNNNETSGDVIED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 MAFHNNHFNHFTDQQQHQPPPPPQQQQQQHFQESAPPNWLLRSDNNFLNLHTAASAAATSSDSPSSAAANQWLSRSSSFLQRGNTANNNNNETSGDVIED 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G11 VPGGEESMIGEKKEAERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYVLLLCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 VPGGEESMIGEKKEAERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYVLLLCS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G11 FKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDEQVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 FKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDEQVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIV 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT5G11 DIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVSKNKRRSNAGENSGRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: RE_057 DIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWSINQRKRNWHSNPSSSTVSKNKRRSNAGENSGRDR 310 320 330 340 350 360 370 380 390

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