◆◆◆RE_0574 detail◆◆◆

Code name	RE_0574
Locus	AT5G25220
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列70.50%一致
comment	0115_アミノ酸配列70%以上一致
sequence	>RE_0574_918bp ATGATTCAGGGAGAGATGAAAACCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGAAGGAGTAGTGAGCTGGCAGAATGCGAGAC ACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCAGCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT CGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAG TTCATGACACATTATGTGTTGCTACTGTGTTCATTTAAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGGAAGCTGTGATGGCTTGTTGGGAGA TTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTCCTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATGCTAA TATGTTCGATGGGGGATTAGATGTGTTGGGTTTTGGTCCTTTGATTCCTACTGAGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACAT GAACTCAAACAGGGTTACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGTTACCAGGAGATACCACCTCTGTTC TCAAAGCTTGGTGGCAATCTCATTCCAAATGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGATAAA CAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCACTGTATTGGAGAACAAACGCAAAAGCAATGCAGGTGACAATAGC GGAAGAGAGCGGTTCGCG >RE_0574_translated MIQGEMKTGGGENKNDGGGATAAEGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQGLVGDDKELDQ FMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKH ELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLENKRKSNAGDNS GRERFA
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 916/1293 (70.8%)（アミノ酸配列で304/431 (70.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G25 ATGGCGTTTCATCACAATCATCTCTCACAAGACCTCTCCTTCAATCATTTCACCGACCAACACCAACCTCCACCTCCGCAACCGCCTCCTCCTCCTCCGC RE_057 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT5G25 AACAGCAACAACATTTCCAAGAAGCACCGCCTCCTAATTGGTTAAACACAGCGCTTCTTCGTTCCTCAGATAACAACAATAACTTCCTCAACCTCCACAC RE_057 ---------------------------------------------------------------------------------------------------- 210 220 230 240 250 260 270 280 290 300 AT5G25 AGCCACCGCTAACACCACAACCGCAAGCAGCTCCGATTCTCCTTCCTCCGCCGCCGCCGCCGCCGCTGCTAACCAGTGGCTATCTCGCTCCTCCTCTTTC RE_057 ---------------------------------------------------------------------------------------------------- 310 320 330 340 350 360 370 380 390 400 AT5G25 CTCCAACGAAACAACAACAACAACGCTTCCATAGTCGGAGATGGGATCGATGATGTCACCGGAGGAGCAGACACTATGATTCAGGGAGAGATGAAAACCG ::::::::::::::::::::::::: RE_057 ---------------------------------------------------------------------------ATGATTCAGGGAGAGATGAAAACCG 10 20 410 420 430 440 450 460 470 480 490 500 AT5G25 GCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGATGGAGTAGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCC :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGAAGGAGTAGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCC 30 40 50 60 70 80 90 100 110 120 510 520 530 540 550 560 570 580 590 600 AT5G25 TCTTTACGAGCAGCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAATCGATGCTCAGCTTGCTCAGTCTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TCTTTACGAGCAGCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAATCGATGCTCAGCTTGCTCAGTCTCAA 130 140 150 160 170 180 190 200 210 220 610 620 630 640 650 660 670 680 690 700 AT5G25 CACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGTGTTGCTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGTGTTGCTAC 230 240 250 260 270 280 290 300 310 320 710 720 730 740 750 760 770 780 790 800 AT5G25 TGTGTTCATTTAAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGGAAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TGTGTTCATTTAAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGGAAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAAC 330 340 350 360 370 380 390 400 410 420 810 820 830 840 850 860 870 880 890 900 AT5G25 AGGAGTGTCTCCTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATGCTAATATGTTCGATGGGGGATTAGATGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AGGAGTGTCTCCTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATGCTAATATGTTCGATGGGGGATTAGATGTG 430 440 450 460 470 480 490 500 510 520 910 920 930 940 950 960 970 980 990 1000 AT5G25 TTGGGTTTTGGTCCTTTGATTCCTACTGAGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGGGTTACAAGGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TTGGGTTTTGGTCCTTTGATTCCTACTGAGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGGGTTACAAGGAGA 530 540 550 560 570 580 590 600 610 620 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G25 AGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTC 630 640 650 660 670 680 690 700 710 720 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G25 CAAATGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGATAAACAATTGGTTCATCAATCAGAGAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CAAATGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGATAAACAATTGGTTCATCAATCAGAGAAAG 730 740 750 760 770 780 790 800 810 820 1210 1220 1230 1240 1250 1260 1270 1280 1290 AT5G25 AGGAACTGGCATAGCAATCCATCTTCTTCCACTGTATTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCGGTTCGCG ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AGGAACTGGCATAGCAATCCATCTTCTTCCACTGTATTGGAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCGGTTCGCG 830 840 850 860 870 880 890 900 910 10 20 30 40 50 60 70 80 90 100 AT5G25 MAFHHNHLSQDLSFNHFTDQHQPPPPQPPPPPPQQQQHFQEAPPPNWLNTALLRSSDNNNNFLNLHTATANTTTASSSDSPSSAAAAAAANQWLSRSSSF RE_057 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT5G25 LQRNNNNNASIVGDGIDDVTGGADTMIQGEMKTGGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQ :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 -------------------------MIQGEMKTGGGENKNDGGGATAAEGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQ 10 20 30 40 50 60 70 210 220 230 240 250 260 270 280 290 300 AT5G25 HVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 HVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDV 80 90 100 110 120 130 140 150 160 170 310 320 330 340 350 360 370 380 390 400 AT5G25 LGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 LGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 180 190 200 210 220 230 240 250 260 270 410 420 430 AT5G25 RNWHSNPSSSTVLKNKRKSNAGDNSGRERFA :::::::::::::.::::::::::::::::: RE_057 RNWHSNPSSSTVLENKRKSNAGDNSGRERFA 280 290 300

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