◆◆◆RE_0575 detail◆◆◆

Code name	RE_0575
Locus	AT5G41410
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	(manual:0708_20080115_0575F/W3/W1/W2/Rrc)
sequence	>RE_0575_1833bp ATGGCAAGAGATCAGTTCTATGGTCACAATAACCATCATCATCAAGAGCAACAACATCAAATGATTAATCAGATCCAAGGGTTTGATGAGACAAACCAAA ACCCAACCGATCATCATCATTACAATCATCAGATCTTTGGCTCAAACTCCAACATGGGTATGATGATAGACTTCTCTAAGCAACAACAGATTAGGATGAC AAGTGGTTCGGATCATCATCATCATCATCATCAGACAAGTGGTGGTACTGATCAGAATCAGCTTCTGGAAGATTCTTCATCTGCCATGAGACTATGCAAT GTTAATAATGATTTCCCAAGTGAAGTAAATGATGAGAGACCACCACAAAGACCAAGCCAAGGTCTTTCCCCTTCTCTCTCCTCTTCAAATCCTACAAGCA TCAGTCTCCAATCTTTCGAACTCAGACCCCAACAACAACAACAACAAGGGTATTCCGGTAATAAATCAACACAACATCAGAATCTCCAACACACGCAGAT GATGATGATGATGATGAATAGTCACCACCAAAACAACAACAATAACAATCATCAGCATCATAATCATCATCAGTTTCAGATTGGGAGTTCCAAGTATTTG AGTCCAGCTCAAGAGCTACTGAGTGAGTTTTGCAGTCTTGGAGTAAAGGAAAGCGATGAAGAAGTGATGATGATGAAGCATAAGAAGAAGCAAAAGGGTA AACAACAAGAAGAGTGGGACACAAGTCACCACAGCAACAATGATCAACATGACCAATCTGCGACTACTTCTTCAAAGAAACATGTTCCACCACTTCACTC TCTTGAGTTCATGGAACTTCAGAAAAGAAAAGCCAAGTTGCTCTCCATGCTCGAAGAGCTTAAAAGAAGATATGGACATTACCGAGAGCAAATGAGAGTT GCGGCGGCAGCCTTTGAAGCGGCGGTTGGACTAGGAGGGGCAGAGATATACACTGCGTTAGCGTCAAGGGCAATGTCAAGACACTTTCGGTGTTTAAAAG ACGGACTTGTGGGACAGATTCAAGCAACAAGTCAAGCTTTGGGAGAGAGAGAAGAGGATAATCGTGCGGTTTCTATTGCAGCACGTGGAGAAACTCCACG GTTGAGATTGCTCGATCAAGCTTTGCGGCAACAGAAATCGTATCGCCAAATGACTCTTGTTGACGCTCATCCTTGGCGTCCACAACGCGGCTTGCCTGAA CGCGCAGTCACAACGTTGAGAGCTTGGCTCTTTGAACACTTTCTTCACCCATATCCGAGCGATGTTGATAAGCACATATTGGCCCGACAAACTGGTTTAT CAAGAAGTCAGGTATCAAATTGGTTTATTAATGCAAGAGTTAGGCTATGGAAACCAATGATTGAAGAAATGTACTGTGAAGAAACAAGAAGTGAACAAAT GGAGATTACAAACCCGATGATGATCGATACTAAGCCGGACCCGGACCAGTTGATCCGTGTCGAACCGGAATCTTTATCCTCAATAGTGACAAACCCTACA TCCAAATCCGGTCACAACTCAACCCATGGAACGATGTCGTTAGGGTCAACGTTTGACTTTTCCTTGTACGGTAACCAAGCTGTGACATACGCTGGTGAAG GAGGGCCACGTGGTGACGTTTCCTTGACGCTTGGGTTACAACGTAACGATGGTAACGGTGGTGTGAGTTTAGCGTTGTCTCCAGTGACGGCTCAAGGTGG CCAACTTTTCTACGGTAGAGACCACATTGAAGAAGGACCGGTTCAATATTCAGCGTCGATGTTAGATGATGATCAAGTTCAGAATTTGCCTTATAGGAAT TTGATGGGAGCTCAATTACTTCATGATATTGTT >RE_0575_translated MARDQFYGHNNHHHQEQQHQMINQIQGFDETNQNPTDHHHYNHQIFGSNSNMGMMIDFSKQQQIRMTSGSDHHHHHHQTSGGTDQNQLLEDSSSAMRLCN VNNDFPSEVNDERPPQRPSQGLSPSLSSSNPTSISLQSFELRPQQQQQQGYSGNKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQIGSSKYL SPAQELLSEFCSLGVKESDEEVMMMKHKKKQKGKQQEEWDTSHHSNNDQHDQSATTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELKRRYGHYREQMRV AAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQALGEREEDNRAVSIAARGETPRLRLLDQALRQQKSYRQMTLVDAHPWRPQRGLPE RAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEEMYCEETRSEQMEITNPMMIDTKPDPDQLIRVEPESLSSIVTNPT SKSGHNSTHGTMSLGSTFDFSLYGNQAVTYAGEGGPRGDVSLTLGLQRNDGNGGVSLALSPVTAQGGQLFYGRDHIEEGPVQYSASMLDDDQVQNLPYRN LMGAQLLHDIV
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1830/1833 (99.8%)（アミノ酸配列で610/611 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G41 ATGGCAAGAGATCAGTTCTATGGTCACAATAACCATCATCATCAAGAGCAACAACATCAAATGATTAATCAGATCCAAGGGTTTGATGAGACAAACCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 ATGGCAAGAGATCAGTTCTATGGTCACAATAACCATCATCATCAAGAGCAACAACATCAAATGATTAATCAGATCCAAGGGTTTGATGAGACAAACCAAA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G41 ACCCAACCGATCATCATCATTACAATCATCAGATCTTTGGCTCAAACTCCAACATGGGTATGATGATAGACTTCTCTAAGCAACAACAGATTAGGATGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 ACCCAACCGATCATCATCATTACAATCATCAGATCTTTGGCTCAAACTCCAACATGGGTATGATGATAGACTTCTCTAAGCAACAACAGATTAGGATGAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G41 AAGTGGTTCGGATCATCATCATCATCATCATCAGACAAGTGGTGGTACTGATCAGAATCAGCTTCTGGAAGATTCTTCATCTGCCATGAGACTATGCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AAGTGGTTCGGATCATCATCATCATCATCATCAGACAAGTGGTGGTACTGATCAGAATCAGCTTCTGGAAGATTCTTCATCTGCCATGAGACTATGCAAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G41 GTTAATAATGATTTCCCAAGTGAAGTAAATGATGAGAGACCACCACAAAGACCAAGCCAAGGTCTTTCCCTTTCTCTCTCCTCTTCAAATCCTACAAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: RE_057 GTTAATAATGATTTCCCAAGTGAAGTAAATGATGAGAGACCACCACAAAGACCAAGCCAAGGTCTTTCCCCTTCTCTCTCCTCTTCAAATCCTACAAGCA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G41 TCAGTCTCCAATCTTTCGAACTCAGACCCCAACAACAACAACAACAAGGGTATTCCGGTAATAAATCAACACAACATCAGAATCTCCAACACACGCAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TCAGTCTCCAATCTTTCGAACTCAGACCCCAACAACAACAACAACAAGGGTATTCCGGTAATAAATCAACACAACATCAGAATCTCCAACACACGCAGAT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G41 GATGATGATGATGATGAATAGTCACCACCAAAACAACAACAATAACAATCATCAGCATCATAATCATCATCAGTTTCAGATTGGGAGTTCCAAGTATTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GATGATGATGATGATGAATAGTCACCACCAAAACAACAACAATAACAATCATCAGCATCATAATCATCATCAGTTTCAGATTGGGAGTTCCAAGTATTTG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G41 AGTCCAGCTCAAGAGCTACTGAGTGAGTTTTGCAGTCTTGGAGTAAAGGAAAGCGATGAAGAAGTGATGATGATGAAGCATAAGAAGAAGCAAAAGGGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AGTCCAGCTCAAGAGCTACTGAGTGAGTTTTGCAGTCTTGGAGTAAAGGAAAGCGATGAAGAAGTGATGATGATGAAGCATAAGAAGAAGCAAAAGGGTA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G41 AACAACAAGAAGAGTGGGACACAAGTCACCACAGCAACAATGATCAACATGACCAATCTGCGACTACTTCTTCAAAGAAACATGTTCCACCACTTCACTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AACAACAAGAAGAGTGGGACACAAGTCACCACAGCAACAATGATCAACATGACCAATCTGCGACTACTTCTTCAAAGAAACATGTTCCACCACTTCACTC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G41 TCTTGAGTTCATGGAACTTCAGAAAAGAAAAGCCAAGTTGCTCTCCATGCTCGAAGAGCTTAAAAGAAGATATGGACATTACCGAGAGCAAATGAGAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TCTTGAGTTCATGGAACTTCAGAAAAGAAAAGCCAAGTTGCTCTCCATGCTCGAAGAGCTTAAAAGAAGATATGGACATTACCGAGAGCAAATGAGAGTT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G41 GCGGCGGCAGCCTTTGAAGCGGCGGTTGGACTAGGAGGGGCAGAGATATACACTGCGTTAGCGTCAAGGGCAATGTCAAGACACTTTCGGTGTTTAAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GCGGCGGCAGCCTTTGAAGCGGCGGTTGGACTAGGAGGGGCAGAGATATACACTGCGTTAGCGTCAAGGGCAATGTCAAGACACTTTCGGTGTTTAAAAG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G41 ACGGACTTGTGGGACAGATTCAAGCAACAAGTCAAGCTTTGGGAGAGAGAGAAGAGGATAATCGTGCGGTTTCTATTGCAGCACGTGGAGAAACTCCACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 ACGGACTTGTGGGACAGATTCAAGCAACAAGTCAAGCTTTGGGAGAGAGAGAAGAGGATAATCGTGCGGTTTCTATTGCAGCACGTGGAGAAACTCCACG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G41 GTTGAGATTGCTCGATCAAGCTTTGCGGCAACAGAAATCGTATCGCCAAATGACTCTTGTTGACGCTCATCCTTGGCGTCCACAACGCGGCTTGCCTGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GTTGAGATTGCTCGATCAAGCTTTGCGGCAACAGAAATCGTATCGCCAAATGACTCTTGTTGACGCTCATCCTTGGCGTCCACAACGCGGCTTGCCTGAA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G41 CGCGCAGTCACAACGTTGAGAGCTTGGCTCTTTGAACACTTTCTTCACCCATATCCGAGCGATGTTGATAAGCATATATTGGCCCGACAAACTGGTTTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: RE_057 CGCGCAGTCACAACGTTGAGAGCTTGGCTCTTTGAACACTTTCTTCACCCATATCCGAGCGATGTTGATAAGCACATATTGGCCCGACAAACTGGTTTAT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G41 CAAGAAGTCAGGTATCAAATTGGTTTATTAATGCAAGAGTTAGGCTATGGAAACCAATGATTGAAGAAATGTACTGTGAAGAAACAAGAAGTGAACAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CAAGAAGTCAGGTATCAAATTGGTTTATTAATGCAAGAGTTAGGCTATGGAAACCAATGATTGAAGAAATGTACTGTGAAGAAACAAGAAGTGAACAAAT 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT5G41 GGAGATTACAAACCCGATGATGATCGATACTAAACCGGACCCGGACCAGTTGATCCGTGTCGAACCGGAATCTTTATCCTCAATAGTGACAAACCCTACA ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GGAGATTACAAACCCGATGATGATCGATACTAAGCCGGACCCGGACCAGTTGATCCGTGTCGAACCGGAATCTTTATCCTCAATAGTGACAAACCCTACA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT5G41 TCCAAATCCGGTCACAACTCAACCCATGGAACGATGTCGTTAGGGTCAACGTTTGACTTTTCCTTGTACGGTAACCAAGCTGTGACATACGCTGGTGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 TCCAAATCCGGTCACAACTCAACCCATGGAACGATGTCGTTAGGGTCAACGTTTGACTTTTCCTTGTACGGTAACCAAGCTGTGACATACGCTGGTGAAG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT5G41 GAGGGCCACGTGGTGACGTTTCCTTGACGCTTGGGTTACAACGTAACGATGGTAACGGTGGTGTGAGTTTAGCGTTGTCTCCAGTGACGGCTCAAGGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 GAGGGCCACGTGGTGACGTTTCCTTGACGCTTGGGTTACAACGTAACGATGGTAACGGTGGTGTGAGTTTAGCGTTGTCTCCAGTGACGGCTCAAGGTGG 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT5G41 CCAACTTTTCTACGGTAGAGACCACATTGAAGAAGGACCGGTTCAATATTCAGCGTCGATGTTAGATGATGATCAAGTTCAGAATTTGCCTTATAGGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 CCAACTTTTCTACGGTAGAGACCACATTGAAGAAGGACCGGTTCAATATTCAGCGTCGATGTTAGATGATGATCAAGTTCAGAATTTGCCTTATAGGAAT 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 AT5G41 TTGATGGGAGCTCAATTACTTCATGATATTGTT ::::::::::::::::::::::::::::::::: RE_057 TTGATGGGAGCTCAATTACTTCATGATATTGTT 1810 1820 1830 10 20 30 40 50 60 70 80 90 100 AT5G41 MARDQFYGHNNHHHQEQQHQMINQIQGFDETNQNPTDHHHYNHQIFGSNSNMGMMIDFSKQQQIRMTSGSDHHHHHHQTSGGTDQNQLLEDSSSAMRLCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 MARDQFYGHNNHHHQEQQHQMINQIQGFDETNQNPTDHHHYNHQIFGSNSNMGMMIDFSKQQQIRMTSGSDHHHHHHQTSGGTDQNQLLEDSSSAMRLCN 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G41 VNNDFPSEVNDERPPQRPSQGLSLSLSSSNPTSISLQSFELRPQQQQQQGYSGNKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQIGSSKYL ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 VNNDFPSEVNDERPPQRPSQGLSPSLSSSNPTSISLQSFELRPQQQQQQGYSGNKSTQHQNLQHTQMMMMMMNSHHQNNNNNNHQHHNHHQFQIGSSKYL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G41 SPAQELLSEFCSLGVKESDEEVMMMKHKKKQKGKQQEEWDTSHHSNNDQHDQSATTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELKRRYGHYREQMRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 SPAQELLSEFCSLGVKESDEEVMMMKHKKKQKGKQQEEWDTSHHSNNDQHDQSATTSSKKHVPPLHSLEFMELQKRKAKLLSMLEELKRRYGHYREQMRV 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G41 AAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQALGEREEDNRAVSIAARGETPRLRLLDQALRQQKSYRQMTLVDAHPWRPQRGLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 AAAAFEAAVGLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQALGEREEDNRAVSIAARGETPRLRLLDQALRQQKSYRQMTLVDAHPWRPQRGLPE 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G41 RAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEEMYCEETRSEQMEITNPMMIDTKPDPDQLIRVEPESLSSIVTNPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 RAVTTLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEEMYCEETRSEQMEITNPMMIDTKPDPDQLIRVEPESLSSIVTNPT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G41 SKSGHNSTHGTMSLGSTFDFSLYGNQAVTYAGEGGPRGDVSLTLGLQRNDGNGGVSLALSPVTAQGGQLFYGRDHIEEGPVQYSASMLDDDQVQNLPYRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_057 SKSGHNSTHGTMSLGSTFDFSLYGNQAVTYAGEGGPRGDVSLTLGLQRNDGNGGVSLALSPVTAQGGQLFYGRDHIEEGPVQYSASMLDDDQVQNLPYRN 510 520 530 540 550 560 570 580 590 600 610 AT5G41 LMGAQLLHDIV ::::::::::: RE_057 LMGAQLLHDIV 610

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