◆◆◆RE_0602 detail◆◆◆

Code name	RE_0602
Locus	AT1G61110
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0229_アミノ酸配列70%以上一致
sequence	>RE_0602_969bp ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTTCGGTTTCACCCGACTGATGAGGAACTAGTAGTTCATTACC TCAAGAAGAAAGCAGATTCTGTTCCACTTCCAGTCTCAATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAGCAAGGCGAGTTT TGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGGAAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTATTGGAAAGCAACG GGAACCGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTTGTTTTTTACGGTGGAAAGCCTCCTAAAGGGATAAAAACAG ATTGGATCATGCATGAATATCGCCTCACTGATGGTAACCTTAGCACTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGGCTAGA CGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGCTCTCA AAATCATCTGCTAATTCTTCTTCTACATCAGTACTAGACAACAACGACAACAATAATAACAATAACGAAGAACACTTTTTCGACGGTATGGTCGTTTCTT CAGACAAACGTTCCTTGTGTGGTCAATACCGAATGGGCCACGAGGCCTCAGGATCATCTTCATTCGGATCTTTCTTATCGAGCAAGAGGTTTCATCATAC AGGTGATCTCAACAATGATAACTACAATGTCTCTTTTGTTTCGATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGTGTTATGGATGCG ACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCTAACATGAACTGGCACTCA >RE_0602_translated MENMGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKAT GTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQRPTMERVLLREDLMEGMLS KSSANSSSTSVLDNNDNNNNNNEEHFFDGMVVSSDKRSLCGQYRMGHEASGSSSFGSFLSSKRFHHTGDLNNDNYNVSFVSMLSEIPQSSGFHANGVMDA TSSLADHGVLRQAFQLPNMNWHS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 968/969 (99.9%)（アミノ酸配列で322/323 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G61 ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTTCGGTTTCACCCGACTGATGAGGAACTAGTAGTTCATTACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTTCGGTTTCACCCGACTGATGAGGAACTAGTAGTTCATTACC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G61 TCAAGAAGAAAGCAGATTCTGTTCCACTTCCAGTCTCAATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAGCAAGGCGAGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 TCAAGAAGAAAGCAGATTCTGTTCCACTTCCAGTCTCAATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAGCAAGGCGAGTTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G61 TGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGGAAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTATTGGAAAGCAACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 TGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGGAAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTATTGGAAAGCAACG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G61 GGAACCGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTTGTTTTTTACGGTGGAAAGCCTCCTAAAGGGATAAAAACAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 GGAACCGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTTGTTTTTTACGGTGGAAAGCCTCCTAAAGGGATAAAAACAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G61 ATTGGATCATGCATGAATATCGCCTCACTGATGGTAACCTTAGCACTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGGCTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 ATTGGATCATGCATGAATATCGCCTCACTGATGGTAACCTTAGCACTGCGGCTAAGCCGCCTGACTTAACCACGACAAGGAAAAACTCACTACGGCTAGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G61 CGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGCTCTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 CGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCACAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGCTCTCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G61 AAATCATCTGCTAATTCTTCTTCTACATCAGTACTAGACAACAACGACAACAATAATAACAATAACGAAGAACACTTTTTCGACGGTATGGTCGTTTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 AAATCATCTGCTAATTCTTCTTCTACATCAGTACTAGACAACAACGACAACAATAATAACAATAACGAAGAACACTTTTTCGACGGTATGGTCGTTTCTT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G61 CAGACAAACGTTCCTTGTGTGGTCAATACCGAATGGGCCACGAGGCCTCAGGATCATCTTCATTCGGATCTTTCTTATCGAGCAAGAGGTTTCATCATAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 CAGACAAACGTTCCTTGTGTGGTCAATACCGAATGGGCCACGAGGCCTCAGGATCATCTTCATTCGGATCTTTCTTATCGAGCAAGAGGTTTCATCATAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G61 AGGTGATCTCAACAATGATAACTACAATGTCTCTTTTGTTTCGATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGTGTTATGGATACG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: RE_060 AGGTGATCTCAACAATGATAACTACAATGTCTCTTTTGTTTCGATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGTGTTATGGATGCG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 AT1G61 ACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCTAACATGAACTGGCACTCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 ACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCTAACATGAACTGGCACTCA 910 920 930 940 950 960 10 20 30 40 50 60 70 80 90 100 AT1G61 MENMGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 MENMGDSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G61 GTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQRPTMERVLLREDLMEGMLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 GTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQRPTMERVLLREDLMEGMLS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G61 KSSANSSSTSVLDNNDNNNNNNEEHFFDGMVVSSDKRSLCGQYRMGHEASGSSSFGSFLSSKRFHHTGDLNNDNYNVSFVSMLSEIPQSSGFHANGVMDT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_060 KSSANSSSTSVLDNNDNNNNNNEEHFFDGMVVSSDKRSLCGQYRMGHEASGSSSFGSFLSSKRFHHTGDLNNDNYNVSFVSMLSEIPQSSGFHANGVMDA 210 220 230 240 250 260 270 280 290 300 310 320 AT1G61 TSSLADHGVLRQAFQLPNMNWHS ::::::::::::::::::::::: RE_060 TSSLADHGVLRQAFQLPNMNWHS 310 320

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