| Code name | RE_0610 | |||
|---|---|---|---|---|
| Locus | AT2G02450 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列73.60%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0610_843bp ATGGCGGCGATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGAGATAGACCGAACCGAGTAACGACTTCAGGATATT TGAAAGCCACCGGAGCTGATAGGATGATCAGATCGGAGACTTCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCTGGTAAAGCCCCTAAAGG CACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCATGAAACCGAGAAGTACCAAAAGGCTGAAATATCATTGTGCCGAGTGTACAAAAGG CCAGGAGTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCATCGACATCATCCCGTTTAGCCTTAAGACAACAAC AACACCATTCATCCTCCTCTAATCATTCCGACAACAACCTTAACAACAACAACATCATCAACAATCTCGAGAAGCTCTCCACCGAATATTCCGGCGACGG CAGCACAACAACAACGACCACAAACAGTAACTCTGACGTTACCATTGCTCTAGCCAATCAAAACATATATCGTCCAATGCCTTACGACACAAGCAACAAC ACATTGATAGTCTCTACGAGAAATCATCAAGACGATGATGAAACTGCCATTGTTGACGATCTTCAAAGACTAGTTAACTACCAAATATCAGATGGAGCGA CAACGCTAATGCCTCAAACTCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCAAACAATGCTTTGTGGGATATGTGGAATCCAATAGT ACCAGATGGAAACAGAGATCACTATACTAATATTCCTTTTAAG >RE_0610_translated MAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYLKATGADRMIRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRLPHHETEKYQKAEISLCRVYKR PGVEDHPSVPRSLSTRHHNHNSSTSSRLALRQQQHHSSSSNHSDNNLNNNNIINNLEKLSTEYSGDGSTTTTTTNSNSDVTIALANQNIYRPMPYDTSNN TLIVSTRNHQDDDETAIVDDLQRLVNYQISDGATTLMPQTQAALAMNMIPAGTIPNNALWDMWNPIVPDGNRDHYTNIPFK |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 841/1137 (74.0%)（アミノ酸配列で279/379 (73.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G02 ATGGCAATTGTATCCTCCACAACAAGCATCATTCCCATGAGTAACCAAGTCAACAATAACGAAAAAGGTATAGAAGACAATGATCATAGAGGCGGCCAAG
RE_061 ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT2G02 AGAGTCATGTCCAAAATGAAGATGAAGCTGATGATCATGATCATGACATGGTCATGCCCGGATTTAGATTCCATCCTACCGAAGAAGAACTCATAGAGTT
RE_061 ----------------------------------------------------------------------------------------------------
210 220 230 240 250 260 270 280 290 300
AT2G02 TTACCTTCGCCGAAAAGTTGAAGGCAAACGCTTTAATGTAGAACTCATCACTTTCCTCGATCTTTATCGCTATGATCCTTGGGAACTTCCTGCTATGGCG
::::::
RE_061 ----------------------------------------------------------------------------------------------ATGGCG
310 320 330 340 350 360 370 380 390 400
AT2G02 GCGATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGAGATAGACCGAACCGAGTAACGACTTCAGGATATTGGAAAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
RE_061 GCGATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGAGATAGACCGAACCGAGTAACGACTTCAGGATATTTGAAAG
10 20 30 40 50 60 70 80 90 100
410 420 430 440 450 460 470 480 490 500
AT2G02 CCACCGGAGCTGATAGGATGATCAGATCGGAGACTTCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCTGGTAAAGCCCCTAAAGGCACTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 CCACCGGAGCTGATAGGATGATCAGATCGGAGACTTCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCTGGTAAAGCCCCTAAAGGCACTCG
110 120 130 140 150 160 170 180 190 200
510 520 530 540 550 560 570 580 590 600
AT2G02 TACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCATGAAACCGAGAAGTACCAAAAGGCTGAAATATCATTGTGCCGAGTGTACAAAAGGCCAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 TACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCATGAAACCGAGAAGTACCAAAAGGCTGAAATATCATTGTGCCGAGTGTACAAAAGGCCAGGA
210 220 230 240 250 260 270 280 290 300
610 620 630 640 650 660 670 680 690 700
AT2G02 GTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCATCGACATCATCCCGTTTAGCCTTAAGACAACAACAACACC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 GTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCATCGACATCATCCCGTTTAGCCTTAAGACAACAACAACACC
310 320 330 340 350 360 370 380 390 400
710 720 730 740 750 760 770 780 790 800
AT2G02 ATTCATCCTCCTCTAATCATTCCGACAACAACCTTAACAACAACAACAACATCAACAATCTCGAGAAGCTCTCCACCGAATATTCCGGCGACGGCAGCAC
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 ATTCATCCTCCTCTAATCATTCCGACAACAACCTTAACAACAACAACATCATCAACAATCTCGAGAAGCTCTCCACCGAATATTCCGGCGACGGCAGCAC
410 420 430 440 450 460 470 480 490 500
810 820 830 840 850 860 870 880 890 900
AT2G02 AACAACAACGACCACAAACAGTAACTCTGACGTTACCATTGCTCTAGCCAATCAAAACATATATCGTCCAATGCCTTACGACACAAGCAACAACACATTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 AACAACAACGACCACAAACAGTAACTCTGACGTTACCATTGCTCTAGCCAATCAAAACATATATCGTCCAATGCCTTACGACACAAGCAACAACACATTG
510 520 530 540 550 560 570 580 590 600
910 920 930 940 950 960 970 980 990 1000
AT2G02 ATAGTCTCTACGAGAAATCATCAAGACGATGATGAAACTGCCATTGTTGACGATCTTCAAAGACTAGTTAACTACCAAATATCAGATGGAGCGACAACGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 ATAGTCTCTACGAGAAATCATCAAGACGATGATGAAACTGCCATTGTTGACGATCTTCAAAGACTAGTTAACTACCAAATATCAGATGGAGCGACAACGC
610 620 630 640 650 660 670 680 690 700
1010 1020 1030 1040 1050 1060 1070 1080 1090 1100
AT2G02 TAATGCCTCAAACTCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCAAACAATGCTTTGTGGGATATGTGGAATCCAATAGTACCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 TAATGCCTCAAACTCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCAAACAATGCTTTGTGGGATATGTGGAATCCAATAGTACCAGA
710 720 730 740 750 760 770 780 790 800
1110 1120 1130
AT2G02 TGGAAACAGAGATCACTATACTAATATTCCTTTTAAG
:::::::::::::::::::::::::::::::::::::
RE_061 TGGAAACAGAGATCACTATACTAATATTCCTTTTAAG
810 820 830 840
10 20 30 40 50 60 70 80 90 100
AT2G02 MAIVSSTTSIIPMSNQVNNNEKGIEDNDHRGGQESHVQNEDEADDHDHDMVMPGFRFHPTEEELIEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMA
::
RE_061 --------------------------------------------------------------------------------------------------MA
110 120 130 140 150 160 170 180 190 200
AT2G02 AIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRLPHHETEKYQKAEISLCRVYKRPG
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 AIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYLKATGADRMIRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRLPHHETEKYQKAEISLCRVYKRPG
10 20 30 40 50 60 70 80 90 100
210 220 230 240 250 260 270 280 290 300
AT2G02 VEDHPSVPRSLSTRHHNHNSSTSSRLALRQQQHHSSSSNHSDNNLNNNNNINNLEKLSTEYSGDGSTTTTTTNSNSDVTIALANQNIYRPMPYDTSNNTL
::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 VEDHPSVPRSLSTRHHNHNSSTSSRLALRQQQHHSSSSNHSDNNLNNNNIINNLEKLSTEYSGDGSTTTTTTNSNSDVTIALANQNIYRPMPYDTSNNTL
110 120 130 140 150 160 170 180 190 200
310 320 330 340 350 360 370
AT2G02 IVSTRNHQDDDETAIVDDLQRLVNYQISDGATTLMPQTQAALAMNMIPAGTIPNNALWDMWNPIVPDGNRDHYTNIPFK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 IVSTRNHQDDDETAIVDDLQRLVNYQISDGATTLMPQTQAALAMNMIPAGTIPNNALWDMWNPIVPDGNRDHYTNIPFK
210 220 230 240 250 260 270 280
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