| Code name | RE_0615 | |||
|---|---|---|---|---|
| Locus | AT2G33480 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.30%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0615_804bp ATGGAGAAGAGGAGCTCTATTAAAAACAGAGGAGTACTTAGATTACCACCAGGGTTCCGATTTCACCCGACCGATGAAGAGCTAGTGGTTCAATATTTAC GTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTAATACCGGAAACCGATGTTTGTAAATTCGATCCATGGGATTTACCAGGTGATTGTGAATCAGA GATGTATTTTTTTAGCACGAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACCGGTTCGGGTTATTGGAAAGCGACTGGTCTCGATAAG CAGATCGGTAAGAAGAAGCTTGTCGTGGGGATGAAGAAAACTCTTGTTTTCTACAAAGGTAAACCACCAAACGGAACAAGAACTAACTGGGTTCTTCATG AATATCGTCTTGTTGATTCACAACAAGATTCATTATATGGACAGAACATGAATTGGGTTTTGTGTAGAGTGTTCTTGAAGAAGAGAAGCAATAGTAATAG TAAGAGGAAAGAAGATGAGAAAGAAGAGGTGGAGAATGAGAAAGAGACAGAGACAGAGAGAGAACGTGAGGAGGAGAACAAGAAGAGTACTTGTCCCATA TTTTATGACTTTATGAGAAAAAACACGAAGAAAAAGAGAAGGAGAAGAAGATGCTGTGATTTGAATTTGACTCCTGCTACTTGTTGTTGTTGCTCTTCTT CGACTTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAACTCACACATCTTCTAATGATAATCGTCAAGAAATCAGTTATCGGGAAAATAAGTTTTGTTTGTT TCTA >RE_0615_translated MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKFDPWDLPGDCESEMYFFSTREAKYPNGNRSNRSTGSGYWKATGLDK QIGKKKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRVFLKKRSNSNSKRKEDEKEEVENEKETETEREREEENKKSTCPI FYDFMRKNTKKKRRRRRCCDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEISYRENKFCLFL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 802/804 (99.8%)（アミノ酸配列で266/268 (99.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G33 ATGGAGAAGAGGAGCTCTATTAAAAACAGAGGAGTACTTAGATTACCACCAGGGTTCCGATTTCACCCGACCGATGAAGAGCTAGTGGTTCAATATTTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 ATGGAGAAGAGGAGCTCTATTAAAAACAGAGGAGTACTTAGATTACCACCAGGGTTCCGATTTCACCCGACCGATGAAGAGCTAGTGGTTCAATATTTAC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G33 GTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTAATACCGGAAACCGATGTTTGTAAATCCGATCCATGGGATTTACCAGGTGATTGTGAATCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
RE_061 GTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTAATACCGGAAACCGATGTTTGTAAATTCGATCCATGGGATTTACCAGGTGATTGTGAATCAGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G33 GATGTATTTTTTTAGCACGAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACCGGTTCGGGTTATTGGAAAGCGACTGGTCTCGATAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 GATGTATTTTTTTAGCACGAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACCGGTTCGGGTTATTGGAAAGCGACTGGTCTCGATAAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G33 CAGATCGGTAAGAAGAAGCTTGTCGTGGGGATGAAGAAAACTCTTGTTTTCTACAAAGGTAAACCACCAAACGGAACAAGAACTAACTGGGTTCTTCATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 CAGATCGGTAAGAAGAAGCTTGTCGTGGGGATGAAGAAAACTCTTGTTTTCTACAAAGGTAAACCACCAAACGGAACAAGAACTAACTGGGTTCTTCATG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G33 AATATCGTCTTGTTGATTCACAACAAGATTCATTATATGGACAGAACATGAATTGGGTTTTGTGTAGAGTGTTCTTGAAGAAGAGAAGCAATAGTAATAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 AATATCGTCTTGTTGATTCACAACAAGATTCATTATATGGACAGAACATGAATTGGGTTTTGTGTAGAGTGTTCTTGAAGAAGAGAAGCAATAGTAATAG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT2G33 TAAGAGGAAAGAAGATGAGAAAGAAGAGGTGGAGAATGAGAAAGAGACAGAGACAGAGAGAGAACGTGAGGAGGAGAACAAGAAGAGTACTTGTCCCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 TAAGAGGAAAGAAGATGAGAAAGAAGAGGTGGAGAATGAGAAAGAGACAGAGACAGAGAGAGAACGTGAGGAGGAGAACAAGAAGAGTACTTGTCCCATA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT2G33 TTTTATGACTTTATGAGAAAAGACACGAAGAAAAAGAGAAGGAGAAGAAGATGCTGTGATTTGAATTTGACTCCTGCTACTTGTTGTTGTTGCTCTTCTT
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 TTTTATGACTTTATGAGAAAAAACACGAAGAAAAAGAGAAGGAGAAGAAGATGCTGTGATTTGAATTTGACTCCTGCTACTTGTTGTTGTTGCTCTTCTT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT2G33 CGACTTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAACTCACACATCTTCTAATGATAATCGTCAAGAAATCAGTTATCGGGAAAATAAGTTTTGTTTGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 CGACTTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAACTCACACATCTTCTAATGATAATCGTCAAGAAATCAGTTATCGGGAAAATAAGTTTTGTTTGTT
710 720 730 740 750 760 770 780 790 800
AT2G33 TCTA
::::
RE_061 TCTA
10 20 30 40 50 60 70 80 90 100
AT2G33 MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDLPGDCESEMYFFSTREAKYPNGNRSNRSTGSGYWKATGLDK
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_061 MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKFDPWDLPGDCESEMYFFSTREAKYPNGNRSNRSTGSGYWKATGLDK
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G33 QIGKKKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRVFLKKRSNSNSKRKEDEKEEVENEKETETEREREEENKKSTCPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 QIGKKKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRVFLKKRSNSNSKRKEDEKEEVENEKETETEREREEENKKSTCPI
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT2G33 FYDFMRKDTKKKRRRRRCCDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEISYRENKFCLFL
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_061 FYDFMRKNTKKKRRRRRCCDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEISYRENKFCLFL
210 220 230 240 250 260
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