◆◆◆RE_0622 detail◆◆◆

Code name	RE_0622
Locus	AT3G10490
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0428_アミノ酸配列70%以上一致 with AT3G10490.2
sequence	>RE_0622_1353bp ATGGGTCGCGAATCTGTGGCTGTTGTGACTGCGCCGCCCTCGGCGGCTGCTCCGGGTACTGCTTCGGTGGCGACCTCGCTTGCTCCTGGCTTCCGATTTC ATCCGACTGATGAGGAACTCGTGAGCTATTACTTGAAGAGGAAGGTTCTGGGCCAACCTGTACGCTTCGATGCGATTGGAGAGGTCGATATATACAAGCA TGAGCCCTGGGATTTAGCAGTGTTTTCGAGATTGAAGACAAGGGACCAAGAATGGTACTTCTACAGTGCATTAGATAAGAAGTATGGAAACGGTGCTAGG ATGAACCGAGCAACTAACAGAGGGTACTGGAAAGCTACTGGAAAAGACAGAGAAATCCGCCGTGACATTCTGCTTCTCGGTATGAAAAAGACACTTGTTT TCCACAGTGGGCGTGCACCAGACGGGCTTCGGACTAATTGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGCA AGATGCATATGTGTTGTGTAGAGTCTTCCACAAGAATAACATTGGGCCACCAAGTGGGAACAGATATGCTCCGTTCATGGAAGAGGAATGGGCTGATGAT GAAGGAGCTCTGATTCCAGGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCAGTAGCCAATGGAAACGACCAGATGGACCAGGAAATCCAGTCAGCCA GCAAGAGTCTCATCAACATCAATGAGCCACCGAGAGAGACAGCTCCACTGGATATCGAATCGGACCAACAGAATCATCATGAGAATGACCTCAAGCCGGA GGAGCATAACAACAATAATAATTATGATGAAAACGAGGAAACACTCAAACGCGAGCAGATGGAAGAAGAGGAGCGTCCTCCTCGACCTGTATGCGTTCTC AACAAAGAAGCTCCATTACCTCTTCTGCAATACAAACGTAGACGCCAAAGCGAGTCCAACAACAACTCAAGCAGGAACACACAGGACCATTGTTCGTCCA CAACAACAACTGTCGACAATACAACCACTTTAATCTCATCATCTGCCGCTGCCACCAACACTGCCATCTCTGCATTGCTTGAGTTCTCACTCATGGGTAT CTCCGACAAGAAAGAAAAGCCGCAGCAACCGCTACGTCCTCACAAGGAACCTTTGCCTCCTCAAACTCCACTTGCATCTCCTGAAGAGAAGGTTAATGAT CTCCAGAAGGAGATTCACCAGATGTCTGTTGAAAGAGAAACTTTCAAGCTTGAAATGATGAGTGCAGAAGCTATGATCAGTATTCTCCAGTCAAGGATCG ATGCGCTGCGTCAGGAGAACGAGGAACTCAAGAAGAACAATGCTAATGGACAA >RE_0622_translated MGRESVAVVTAPPSAAAPGTASVATSLAPGFRFHPTDEELVSYYLKRKVLGQPVRFDAIGEVDIYKHEPWDLAVFSRLKTRDQEWYFYSALDKKYGNGAR MNRATNRGYWKATGKDREIRRDILLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETEKNGNLVQDAYVLCRVFHKNNIGPPSGNRYAPFMEEEWADD EGALIPGIDVKLRLEPPPVANGNDQMDQEIQSASKSLININEPPRETAPLDIESDQQNHHENDLKPEEHNNNNNYDENEETLKREQMEEEERPPRPVCVL NKEAPLPLLQYKRRRQSESNNNSSRNTQDHCSSTTTTVDNTTTLISSSAAATNTAISALLEFSLMGISDKKEKPQQPLRPHKEPLPPQTPLASPEEKVND LQKEIHQMSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKNNANGQ
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 701/1356 (51.7%)（アミノ酸配列で229/451 (50.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G10 ATGGGTCGCGAATCTGTGGCTGTTGTGACTGCGCCGCCCTCGGCGACTGCTCCGGGTACTGCTTCGGTGGCGACCTCGCTTGCTCCTGGCTTCCGATTTC ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 ATGGGTCGCGAATCTGTGGCTGTTGTGACTGCGCCGCCCTCGGCGGCTGCTCCGGGTACTGCTTCGGTGGCGACCTCGCTTGCTCCTGGCTTCCGATTTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G10 ATCCGACTGATGAGGAACTCGTGAGCTATTACTTGAAGAGGAAGGTTCTGGGCCAACCTGTACGCTTCGATGCGATTGGAGAGGTCGATATATACAAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 ATCCGACTGATGAGGAACTCGTGAGCTATTACTTGAAGAGGAAGGTTCTGGGCCAACCTGTACGCTTCGATGCGATTGGAGAGGTCGATATATACAAGCA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G10 TGAGCCCTGGGATTTAGCAGTGTTTTCGAGATTGAAGACAAGGGACCAAGAATGGTACTTCTACAGTGCATTAGATAAGAAGTATGGAAACGGTGCTAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 TGAGCCCTGGGATTTAGCAGTGTTTTCGAGATTGAAGACAAGGGACCAAGAATGGTACTTCTACAGTGCATTAGATAAGAAGTATGGAAACGGTGCTAGG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G10 ATGAACCGAGCAACTAACAGAGGGTACTGGAAAGCTACTGGAAAAGACAGAGAAATCCGCCGTGACATTCTGCTTCTCGGTATGAAAAAGACACTTGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 ATGAACCGAGCAACTAACAGAGGGTACTGGAAAGCTACTGGAAAAGACAGAGAAATCCGCCGTGACATTCTGCTTCTCGGTATGAAAAAGACACTTGTTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G10 TCCACAGTGGGCGTGCACCAGACGGGCTTCGGACTAATTGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 TCCACAGTGGGCGTGCACCAGACGGGCTTCGGACTAATTGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGCA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G10 AGATGCATATGTGTTGTGTAGAGTCTTCCACAAGAATAACATTGGGCCACCAAGTGGGAACAGATATGCTCCGTTCATGGAAGAGGAATGGGCTGATGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 AGATGCATATGTGTTGTGTAGAGTCTTCCACAAGAATAACATTGGGCCACCAAGTGGGAACAGATATGCTCCGTTCATGGAAGAGGAATGGGCTGATGAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 AT3G10 GAAGGAGCTCTGATTCCAGGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCAGTAGCCAATGGAAACGACCAGATGGACCAGATAATTTATGCGTC-- :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: : ::: RE_062 GAAGGAGCTCTGATTCCAGGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCAGTAGCCAATGGAAACGACCAGATGGACCAGGAAATCCA---GTCAG 610 620 630 640 650 660 670 680 690 700 710 AT3G10 ---------GTCT-----------------------------GGGGTTCACTTG---------------------------------------------- :::: : : :::: : RE_062 CCAGCAAGAGTCTCATCAACATCAATGAGCCACCGAGAGAGACAGCTCCACTGGATATCGAATCGGACCAACAGAATCATCATGAGAATGACCTCAAGCC 700 710 720 730 740 750 760 770 780 790 AT3G10 ---------------------------------------------------------------------------------------------------- RE_062 GGAGGAGCATAACAACAATAATAATTATGATGAAAACGAGGAAACACTCAAACGCGAGCAGATGGAAGAAGAGGAGCGTCCTCCTCGACCTGTATGCGTT 800 810 820 830 840 850 860 870 880 890 AT3G10 ---------------------------------------------------------------------------------------------------- RE_062 CTCAACAAAGAAGCTCCATTACCTCTTCTGCAATACAAACGTAGACGCCAAAGCGAGTCCAACAACAACTCAAGCAGGAACACACAGGACCATTGTTCGT 900 910 920 930 940 950 960 970 980 990 AT3G10 ---------------------------------------------------------------------------------------------------- RE_062 CCACAACAACAACTGTCGACAATACAACCACTTTAATCTCATCATCTGCCGCTGCCACCAACACTGCCATCTCTGCATTGCTTGAGTTCTCACTCATGGG 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 AT3G10 ---------------------------------------------------------------------------------------------------- RE_062 TATCTCCGACAAGAAAGAAAAGCCGCAGCAACCGCTACGTCCTCACAAGGAACCTTTGCCTCCTCAAACTCCACTTGCATCTCCTGAAGAGAAGGTTAAT 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT3G10 ---------------------------------------------------------------------------------------------------- RE_062 GATCTCCAGAAGGAGATTCACCAGATGTCTGTTGAAAGAGAAACTTTCAAGCTTGAAATGATGAGTGCAGAAGCTATGATCAGTATTCTCCAGTCAAGGA 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 AT3G10 -------------------------------------------------------- RE_062 TCGATGCGCTGCGTCAGGAGAACGAGGAACTCAAGAAGAACAATGCTAATGGACAA 1300 1310 1320 1330 1340 1350 10 20 30 40 50 60 70 80 90 100 AT3G10 MGRESVAVVTAPPSATAPGTASVATSLAPGFRFHPTDEELVSYYLKRKVLGQPVRFDAIGEVDIYKHEPWDLAVFSRLKTRDQEWYFYSALDKKYGNGAR ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 MGRESVAVVTAPPSAAAPGTASVATSLAPGFRFHPTDEELVSYYLKRKVLGQPVRFDAIGEVDIYKHEPWDLAVFSRLKTRDQEWYFYSALDKKYGNGAR 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G10 MNRATNRGYWKATGKDREIRRDILLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETEKNGNLVQDAYVLCRVFHKNNIGPPSGNRYAPFMEEEWADD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_062 MNRATNRGYWKATGKDREIRRDILLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETEKNGNLVQDAYVLCRVFHKNNIGPPSGNRYAPFMEEEWADD 110 120 130 140 150 160 170 180 190 200 210 220 230 AT3G10 EGALIPGIDVKLRLEPPPVANGNDQMDQIIYASSGVHL-------------------------------------------------------------- :::::::::::::::::::::::::::: : ..: . RE_062 EGALIPGIDVKLRLEPPPVANGNDQMDQEIQSASKSLININEPPRETAPLDIESDQQNHHENDLKPEEHNNNNNYDENEETLKREQMEEEERPPRPVCVL 210 220 230 240 250 260 270 280 290 300 AT3G10 ---------------------------------------------------------------------------------------------------- RE_062 NKEAPLPLLQYKRRRQSESNNNSSRNTQDHCSSTTTTVDNTTTLISSSAAATNTAISALLEFSLMGISDKKEKPQQPLRPHKEPLPPQTPLASPEEKVND 310 320 330 340 350 360 370 380 390 400 AT3G10 --------------------------------------------------- RE_062 LQKEIHQMSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKNNANGQ 410 420 430 440 450

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