| Code name | RE_0629 | |||
|---|---|---|---|---|
| Locus | AT3G17730 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0629_738bp ATGGCTCCAGTCGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTAAACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCG AGCTTGATATAATTCCCGAGGTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGAGATCCGGAGTGGTATTTTTT TGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACGAACCGAGCAACGAGAGGTGGGTACTGGAAATCGACCGGCAAAGATCGGAGAGTGACAAGT CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAAGGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCG ATGATAAGGATTGTGACGATCCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAAAAGAACGGAATATGTTCGGAGTTGGAATCAGAACG GCAATTGCAAACGGGACAATGTAGCTTCACAAGGGCGTCAATGGAGGAGATCAATTCGAATAACAACAACAATTATAATAATGATTATGAGACAATGTCG CCGGAGGTGGGAGTTTCCTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCGTGGATGCAGTTTATAACAGATGACGCATGGGACACGTCAT CAAATGGTGCAGCTATGGGACATGGTCAAGGGGTTTAT >RE_0629_translated MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTS QSRAIGMKKTLVYYKGRAPQGIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSFTRASMEEINSNNNNNYNNDYETMS PEVGVSSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAMGHGQGVY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 737/738 (99.9%)（アミノ酸配列で245/246 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G17 ATGGCTCCAGTCGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTAAACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 ATGGCTCCAGTCGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTAAACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G17 AGCTTGATATAATTCCCGAGGTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGAGATCCGGAGTGGTATTTTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 AGCTTGATATAATTCCCGAGGTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGAGATCCGGAGTGGTATTTTTT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G17 TGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACGAACCGAGCAACGAGAGGTGGGTACTGGAAATCGACCGGCAAAGATCGGAGAGTGACAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 TGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACGAACCGAGCAACGAGAGGTGGGTACTGGAAATCGACCGGCAAAGATCGGAGAGTGACAAGT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G17 CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAAGGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 CAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAAGGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G17 ATGATAAGGATTGTGACGATCCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAAAAGAACGGAATATGTTCGGAGTTGGAATCAGAACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 ATGATAAGGATTGTGACGATCCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAAAAGAACGGAATATGTTCGGAGTTGGAATCAGAACG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G17 GCAATTGCAAACGGGACAATGTAGCTTCACAACGGCGTCAATGGAGGAGATCAATTCGAATAACAACAACAATTATAATAATGATTATGAGACAATGTCG
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 GCAATTGCAAACGGGACAATGTAGCTTCACAAGGGCGTCAATGGAGGAGATCAATTCGAATAACAACAACAATTATAATAATGATTATGAGACAATGTCG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G17 CCGGAGGTGGGAGTTTCCTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCGTGGATGCAGTTTATAACAGATGACGCATGGGACACGTCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 CCGGAGGTGGGAGTTTCCTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCGTGGATGCAGTTTATAACAGATGACGCATGGGACACGTCAT
610 620 630 640 650 660 670 680 690 700
710 720 730
AT3G17 CAAATGGTGCAGCTATGGGACATGGTCAAGGGGTTTAT
::::::::::::::::::::::::::::::::::::::
RE_062 CAAATGGTGCAGCTATGGGACATGGTCAAGGGGTTTAT
710 720 730
10 20 30 40 50 60 70 80 90 100
AT3G17 MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_062 MAPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G17 QSRAIGMKKTLVYYKGRAPQGIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSFTTASMEEINSNNNNNYNNDYETMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
RE_062 QSRAIGMKKTLVYYKGRAPQGIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNGICSELESERQLQTGQCSFTRASMEEINSNNNNNYNNDYETMS
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT3G17 PEVGVSSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAMGHGQGVY
::::::::::::::::::::::::::::::::::::::::::::::
RE_062 PEVGVSSACVEEVVDDKDDSWMQFITDDAWDTSSNGAAMGHGQGVY
210 220 230 240
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