◆◆◆RE_0643 detail◆◆◆

Code name	RE_0643
Locus	AT5G04410
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0526_20080115_0643_FRW1W2_5555
sequence	>RE_0643_1704bp ATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTTCCGTTTTCACCCGACGGATGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAACA AACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAGTCTGAGCCTTGGGATCTACCAGATAAGTCGAAGCTGAAAAGTAGAGACTTGGAATG GTACTTCTTCAGTATGCTGGATAAGAAGTACAGTAATGGTTCCAAGACGAATCGTGCTACGGAGAAAGGGTATTGGAAGACGACTGGGAAAGATCGGGAG ATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGACACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCATGAGT ATCGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCACAAAAGGAAGCATATGTGTTATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAA TGGGGAGCAGTATGGTGCTCCTTATCTTGAGGAGGAGTGGGAAGAAGATGGAATGACTTATGTACCTGCTCAAGATGCTTTCAGTGAAGGATTGGCTTTG AATGATGATGTTTATGTCGATATTGATGACATCGACGAGAAGCCCGAAAATCTGGTGGTCTATGATGCCGTTCCTATTCTACCTAACTATTGTCATGGGG AATCAAGTAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCAGGAAACAATGTTGTCGACTCTGGTGGGTACTTTGAACAACC AATTGAAACTTTTGAGGAAGATCGGAAGCCTATTATACGGGAGGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAACAAATTGGCTGTGGTGTGCAA GACGAAAATGTGGTGAATCTGGAATCTTCCAACAATAATGTGTTTGTAGCTGATACATGCTACAGTGACATTCCTATTGATCATAACTATTTACCCGATG AGCCATTCATGGATCCTAATAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAACGAATGATCTCAGCTGTGCTCAACAAGATGATTTTAACTTCGA AGATTATCTCAGCTTCTTTGATGATGAGGGTTTGACTTTTGACGATTCTCTATTAATGGGACCTGAAGATTTTCTTCCCAACCAAGAAGCCCTTGACCAG AAACCTGCCCCTAAAGAATTGGAGAAGGAGGTCGCAGGAGGCAAAGAGGCAGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCTTCAAAACAAGATACAG ATTTCAAGGACTTTGATTCAGCTCCGAAGTACCCATTTCTCAAAAAGACGAGCCACATGCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTT CCAAACAAAGGACGCAATGCGTCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATGAGAATATCAAACATGACTCTAGCAGCG GACAGCGGTATGGGCTGGTCATATGACAAGAACGGTAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACAGGATGATGCGATGACTGCCTCGGGAA GCAAGACAGGAATTACGGCGACAAGAGCTATGTTAGTCTTCATGTGTTTATGGGTTCTCCTACTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGC TCGG >RE_0643_translated MGRGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDRE IRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGVPQKEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEEDGMTYVPAQDAFSEGLAL NDDVYVDIDDIDEKPENLVVYDAVPILPNYCHGESSNNVESGNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQ DENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSCAQQDDFNFEDYLSFFDDEGLTFDDSLLMGPEDFLPNQEALDQ KPAPKELEKEVAGGKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKDAMRLHAAQSSGSVHVTAGMMRISNMTLAA DSGMGWSYDKNGNLNVVLSFGVVQQDDAMTASGSKTGITATRAMLVFMCLWVLLLSVSFKIVTMVSAR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1699/1704 (99.7%)（アミノ酸配列で567/568 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G04 ATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTTCCGTTTTCACCCGACGGATGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 ATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTTCCGTTTTCACCCGACGGATGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAACA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G04 AACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAGTCTGAGCCTTGGGATCTACCAGATAAGTCGAAGCTGAAAAGTAGAGACTTGGAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAGTCTGAGCCTTGGGATCTACCAGATAAGTCGAAGCTGAAAAGTAGAGACTTGGAATG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G04 GTACTTCTTTAGTATGCTGGATAAGAAGTACAGTAATGGTTCCAAGACGAATCGTGCTACGGAGAAAGGGTATTGGAAGACGACTGGGAAAGATCGGGAG ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 GTACTTCTTCAGTATGCTGGATAAGAAGTACAGTAATGGTTCCAAGACGAATCGTGCTACGGAGAAAGGGTATTGGAAGACGACTGGGAAAGATCGGGAG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G04 ATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGACACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCATGAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 ATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGACACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCATGAGT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 AT5G04 ATCGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCACAA---GAAGCATATGTGTTATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAA :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 ATCGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCACAAAAGGAAGCATATGTGTTATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAA 410 420 430 440 450 460 470 480 490 500 500 510 520 530 540 550 560 570 580 590 AT5G04 TGGGGAGCAGTATGGTGCTCCTTATCTTGAGGAGGAGTGGGAAGAAGATGGAATGACTTATGTACCTGCTCAAGATGCTTTCAGTGAAGGATTGGCTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 TGGGGAGCAGTATGGTGCTCCTTATCTTGAGGAGGAGTGGGAAGAAGATGGAATGACTTATGTACCTGCTCAAGATGCTTTCAGTGAAGGATTGGCTTTG 510 520 530 540 550 560 570 580 590 600 600 610 620 630 640 650 660 670 680 690 AT5G04 AATGATGATGTTTATGTCGATATTGATGACATTGACGAGAAGCCCGAAAATCTGGTGGTCTATGATGCCGTTCCTATTCTACCTAACTATTGTCATGGGG :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AATGATGATGTTTATGTCGATATTGATGACATCGACGAGAAGCCCGAAAATCTGGTGGTCTATGATGCCGTTCCTATTCTACCTAACTATTGTCATGGGG 610 620 630 640 650 660 670 680 690 700 700 710 720 730 740 750 760 770 780 790 AT5G04 AATCAAGTAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCAGGAAACAATGTTGTCGACTCTGGTGGGTACTTTGAACAACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AATCAAGTAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCAGGAAACAATGTTGTCGACTCTGGTGGGTACTTTGAACAACC 710 720 730 740 750 760 770 780 790 800 800 810 820 830 840 850 860 870 880 890 AT5G04 AATTGAAACTTTTGAGGAAGATCGGAAGCCTATTATACGGGAGGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAACAAATTGGCTGTGGTGTGCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AATTGAAACTTTTGAGGAAGATCGGAAGCCTATTATACGGGAGGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAACAAATTGGCTGTGGTGTGCAA 810 820 830 840 850 860 870 880 890 900 900 910 920 930 940 950 960 970 980 990 AT5G04 GACGAAAATGTGGTGAATCTGGAATCTTCCAACAATAATGTGTTTGTAGCTGATACATGCTACAGTGACATTCCTATTGATCATAACTATTTACCCGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 GACGAAAATGTGGTGAATCTGGAATCTTCCAACAATAATGTGTTTGTAGCTGATACATGCTACAGTGACATTCCTATTGATCATAACTATTTACCCGATG 910 920 930 940 950 960 970 980 990 1000 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 AT5G04 AGCCATTCATGGATCCTAATAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAACGAATGATCTCAGCTGTGCTCAACAAGATGATTTTAACTTCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AGCCATTCATGGATCCTAATAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAACGAATGATCTCAGCTGTGCTCAACAAGATGATTTTAACTTCGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT5G04 AGATTATCTCAGCTTCTTTGATGATGAGGGTTTGACTTTTGACGATTCTCTATTAATGGGACCTGAAGATTTTCTTCCCAACCAAGAAGCCCTTGACCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AGATTATCTCAGCTTCTTTGATGATGAGGGTTTGACTTTTGACGATTCTCTATTAATGGGACCTGAAGATTTTCTTCCCAACCAAGAAGCCCTTGACCAG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 AT5G04 AAACCTGCCCCTAAAGAATTGGAGAAGGAGGTCGCAGGAGGCAAAGAGGCAGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCTTCAAAACAAGATACAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 AAACCTGCCCCTAAAGAATTGGAGAAGGAGGTCGCAGGAGGCAAAGAGGCAGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCTTCAAAACAAGATACAG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 AT5G04 ATTTCAAGGACTTTGATTCAGCTCCGAAGTACCCATTTCTCAAAAAGACGAGCCACATGCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 ATTTCAAGGACTTTGATTCAGCTCCGAAGTACCCATTTCTCAAAAAGACGAGCCACATGCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTT 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 AT5G04 CCAAACAAAGGACGCAATGCGTCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATGAGAATATCAAACATGACTCTAGCAGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 CCAAACAAAGGACGCAATGCGTCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATGAGAATATCAAACATGACTCTAGCAGCG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 AT5G04 GACAGCGGTATGGGCTGGTCATATGACAAGAACGGTAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACAGGATGATGCGATGACTGCCTCGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 GACAGCGGTATGGGCTGGTCATATGACAAGAACGGTAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACAGGATGATGCGATGACTGCCTCGGGAA 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 AT5G04 GCAAGACAGGAATTACGGCGACAAGAGCTATGTTAGTCTTCATGTGTTTATGGGTTCTCCTACTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 GCAAGACAGGAATTACGGCGACAAGAGCTATGTTAGTCTTCATGTGTTTATGGGTTCTCCTACTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGC 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1700 AT5G04 TCGG :::: RE_064 TCGG 10 20 30 40 50 60 70 80 90 100 AT5G04 MGRGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 MGRGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDRE 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 AT5G04 IRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGVPQ-EAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEEDGMTYVPAQDAFSEGLAL :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 IRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGVPQKEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEEDGMTYVPAQDAFSEGLAL 110 120 130 140 150 160 170 180 190 200 200 210 220 230 240 250 260 270 280 290 AT5G04 NDDVYVDIDDIDEKPENLVVYDAVPILPNYCHGESSNNVESGNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 NDDVYVDIDDIDEKPENLVVYDAVPILPNYCHGESSNNVESGNYSDSGNYIQPGNNVVDSGGYFEQPIETFEEDRKPIIREGSIQPCSLFPEEQIGCGVQ 210 220 230 240 250 260 270 280 290 300 300 310 320 330 340 350 360 370 380 390 AT5G04 DENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSCAQQDDFNFEDYLSFFDDEGLTFDDSLLMGPEDFLPNQEALDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 DENVVNLESSNNNVFVADTCYSDIPIDHNYLPDEPFMDPNNNLPLNDGLYLETNDLSCAQQDDFNFEDYLSFFDDEGLTFDDSLLMGPEDFLPNQEALDQ 310 320 330 340 350 360 370 380 390 400 400 410 420 430 440 450 460 470 480 490 AT5G04 KPAPKELEKEVAGGKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKDAMRLHAAQSSGSVHVTAGMMRISNMTLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 KPAPKELEKEVAGGKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKDAMRLHAAQSSGSVHVTAGMMRISNMTLAA 410 420 430 440 450 460 470 480 490 500 500 510 520 530 540 550 560 AT5G04 DSGMGWSYDKNGNLNVVLSFGVVQQDDAMTASGSKTGITATRAMLVFMCLWVLLLSVSFKIVTMVSAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_064 DSGMGWSYDKNGNLNVVLSFGVVQQDDAMTASGSKTGITATRAMLVFMCLWVLLLSVSFKIVTMVSAR 510 520 530 540 550 560

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