◆◆◆RE_0656 detail◆◆◆

Code name	RE_0656
Locus	AT5G53950
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0115_アミノ酸配列70%以上一致/0311_アミノ酸配列100%一致
sequence	>RE_0656_1125bp ATGGACATTCCGTATTACCACTACGACCATGGCGGAGACAGCCAATATCTTCCACCGGGTTTCAGGTTTCATCCCACGGACGAAGAGCTCATCACTCATT ACCTTCTCCGCAAAGTCCTCGACGGTTGCTTCTCAAGCCGTGCCATCGCAGAAGTTGATCTCAACAAGTGTGAGCCTTGGCAACTTCCCGGGAGAGCTAA GATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGACCGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT ACCGGAAAAGACAGAGAGATCTTTAGTTCAAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAGGGAGAGA AGAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAATGGGTGATCTCTAGGGTTTT CCAGAAAACCACTTTAGCTAGCACCGGAGCCGTCTCCGAAGGAGGAGGAGGAGGAGGAGCAACTGTGAGCGTAAGCAGCGGTACTGGTCCATCTAAAAAG ACGAAAGTACCCTCAACAATCTCAAGAAACTATCAAGAACAACCAAGCTCTCCTTCCTCCGTCTCACTCCCACCTCTCCTGGATCCGACCACTACCCTCG GCTACACCGACAGCAGTTGCTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACCGAGCACGTGTCCTGTTTCTCCACTGTCCC TACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATTCAGCCGTCTTCCACCGCCGCTAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTTTCTAGA AACGTCTCGACTCAATCTAACTTCAGATCGTTCCAAGAAAACTTCAATCAATTTCCTTACTTTGGATCGTCTTCTGCATCGACTATGACCTCCGCCGTTA ATCTGCCTTCTTTCCAAGGCGGCGGAGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCCGAAGAGAATGAGTCAAAGGTCGGTGTGCTTCATGC TGGACTTGACTGTATTTGGAACTAC >RE_0656_translated MDIPYYHYDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKA TGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVSEGGGGGGATVSVSSGTGPSKK TKVPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSCFSTVPTTTTALGLDVNSFSRLPPPLGFDFDPFPRFVSR NVSTQSNFRSFQENFNQFPYFGSSSASTMTSAVNLPSFQGGGGVSGMNYWLPATAEENESKVGVLHAGLDCIWNY
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1124/1125 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G53 ATGGACATTCCGTATTACCACTACGACCATGGCGGAGACAGCCAATATCTTCCACCGGGTTTCAGGTTTCATCCCACGGACGAAGAGCTCATCACTCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 ATGGACATTCCGTATTACCACTACGACCATGGCGGAGACAGCCAATATCTTCCACCGGGTTTCAGGTTTCATCCCACGGACGAAGAGCTCATCACTCATT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G53 ACCTTCTCCGCAAAGTCCTCGACGGTTGCTTCTCAAGCCGTGCCATCGCAGAAGTTGATCTCAACAAGTGTGAGCCTTGGCAACTTCCCGGGAGAGCTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 ACCTTCTCCGCAAAGTCCTCGACGGTTGCTTCTCAAGCCGTGCCATCGCAGAAGTTGATCTCAACAAGTGTGAGCCTTGGCAACTTCCCGGGAGAGCTAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G53 GATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGACCGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 GATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGACCGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G53 ACCGGAAAAGACAGAGAGATCTTTAGTTCAAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAAGGAGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: RE_065 ACCGGAAAAGACAGAGAGATCTTTAGTTCAAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAGGGAGAGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G53 AGAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAATGGGTGATCTCTAGGGTTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 AGAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAATGGGTGATCTCTAGGGTTTT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G53 CCAGAAAACCACTTTAGCTAGCACCGGAGCCGTCTCCGAAGGAGGAGGAGGAGGAGGAGCAACTGTGAGCGTAAGCAGCGGTACTGGTCCATCTAAAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 CCAGAAAACCACTTTAGCTAGCACCGGAGCCGTCTCCGAAGGAGGAGGAGGAGGAGGAGCAACTGTGAGCGTAAGCAGCGGTACTGGTCCATCTAAAAAG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G53 ACGAAAGTACCCTCAACAATCTCAAGAAACTATCAAGAACAACCAAGCTCTCCTTCCTCCGTCTCACTCCCACCTCTCCTGGATCCGACCACTACCCTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 ACGAAAGTACCCTCAACAATCTCAAGAAACTATCAAGAACAACCAAGCTCTCCTTCCTCCGTCTCACTCCCACCTCTCCTGGATCCGACCACTACCCTCG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G53 GCTACACCGACAGCAGTTGCTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACCGAGCACGTGTCCTGTTTCTCCACTGTCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 GCTACACCGACAGCAGTTGCTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACCGAGCACGTGTCCTGTTTCTCCACTGTCCC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G53 TACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATTCAGCCGTCTTCCACCGCCGCTAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTTTCTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 TACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATTCAGCCGTCTTCCACCGCCGCTAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTTTCTAGA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G53 AACGTCTCGACTCAATCTAACTTCAGATCGTTCCAAGAAAACTTCAATCAATTTCCTTACTTTGGATCGTCTTCTGCATCGACTATGACCTCCGCCGTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 AACGTCTCGACTCAATCTAACTTCAGATCGTTCCAAGAAAACTTCAATCAATTTCCTTACTTTGGATCGTCTTCTGCATCGACTATGACCTCCGCCGTTA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G53 ATCTGCCTTCTTTCCAAGGCGGCGGAGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCCGAAGAGAATGAGTCAAAGGTCGGTGTGCTTCATGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 ATCTGCCTTCTTTCCAAGGCGGCGGAGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCCGAAGAGAATGAGTCAAAGGTCGGTGTGCTTCATGC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 AT5G53 TGGACTTGACTGTATTTGGAACTAC ::::::::::::::::::::::::: RE_065 TGGACTTGACTGTATTTGGAACTAC 1110 1120 10 20 30 40 50 60 70 80 90 100 AT5G53 MDIPYYHYDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 MDIPYYHYDHGGDSQYLPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G53 TGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVSEGGGGGGATVSVSSGTGPSKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 TGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLASTGAVSEGGGGGGATVSVSSGTGPSKK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G53 TKVPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSCFSTVPTTTTALGLDVNSFSRLPPPLGFDFDPFPRFVSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 TKVPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSCFSTVPTTTTALGLDVNSFSRLPPPLGFDFDPFPRFVSR 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT5G53 NVSTQSNFRSFQENFNQFPYFGSSSASTMTSAVNLPSFQGGGGVSGMNYWLPATAEENESKVGVLHAGLDCIWNY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_065 NVSTQSNFRSFQENFNQFPYFGSSSASTMTSAVNLPSFQGGGGVSGMNYWLPATAEENESKVGVLHAGLDCIWNY 310 320 330 340 350 360 370

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