◆◆◆RE_0669 detail◆◆◆

Code name	RE_0669
Locus	AT3G06410
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列93.10%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0669_1311bp ATGGGTGTTTTTGTAGCTCCGATGTGGCGGTTAGGGTTGAGCGGCGGCGGCGGAGGTGGAGGAGGTGGAGAATCGTACCCGGAGAGACCTGACGAGCCTG ATTGTATTTATCACTTGAGAACCGGCGTTTGCGGGTACGGGTCAAGATGTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGG AGAAGCTGGAGCTTTACCGGAGAGGATGGGACATCCGGTTTGTCAGCATTTTATGCGAACTGGTACGTGTAAATTCGGTGCTTCTTGCAAGTATCATCAT CCTAGGCAAGGAGGTGGTGGTGGTTCCGTTGCGCCTGTCTCGCTAAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCTCTTATTACTTGA GAACCGGTCAGTGTAAATTTGGTTTGACTTGTAGATTCAACCATCCCGTGCCACTCGCTGTACAGGGTCCACCTCAGCAGCCGCAACAGCAGCAGCCACA GCCACAGCCGCAGCTACAGACTATTTATCCGACACTTCAATCTCAATCTATTCCTTCGTCTCAACAATATGGGTTAGTTTTGACTAGGCCTTCTTTTTTA ACTGGTTCATATCTTCAAAGCCCTTACGGTCCTCCAATGGTTCTGCCTCCTGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGGCTTCTTTAAGTG CAATGCCTTCGCCTGGAACTCAACCGTCTATTGGATCAAGCTCTATTTATGGACTCACGCCGTTATCTCCTTCAGCGACTGCATATACAGGAACATATCA ATCTGTGCCTTCTTCAAATTCCACCTCAAAAGAGTTTCCTCAGCGATCTGATCAACCCGAGTGCCAATACTTCATGAGAACTGGTGACTGTAAATTCGGA TCTTCGTGCCGATACCATCATCCTGTAGATGCAGTTCCACCTAAGACTGGCATTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCCGGCGTAGCGCAAT GCACTCACTTTGCTCAACACGGAATCTGCAAGTTTGGACCGGCGTGTAAGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATC ACTAACTGATATGCCCGTGGCGCCATACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCAGTAAGCTCTAGCAATGAACCCACCAAAGAGGCT GTGACTCCTGCAGTTTCTTCTATGGTCAGTGGCTTGAGCCGCCCTGAGCCAGCTGAGACGAGTGGTGACTCAGCCAGCGTCAGTGGCAGCATAGAAGCTA AGACTTCAAGT >RE_0669_translated MGVFVAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYHLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHH PRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQSIPSSQQYGLVLTRPSFL TGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRSDQPECQYFMRTGDCKFG SSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEPTKEA VTPAVSSMVSGLSRPEPAETSGDSASVSGSIEAKTSS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1301/1386 (93.9%)（アミノ酸配列で430/462 (93.1%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G06 ATGGAGCGGTACGGTCGCCCCGGTGAAGAAGGGTCGCGATCGGATCCATCTCTTGAATGGACCTCTCATGGTGGTGAAACCGCTGTCGAAGCTCCGATGT :::: :: : : : ::::::::::: RE_066 -------------------------------------------------------------------ATGGGTGT--------TTTTGTAGCTCCGATGT 10 20 110 120 130 140 150 160 170 180 190 200 AT3G06 GGCGGTTAGGGTTGAGCGGCGGCGGCGGAGGTGGAGGAGGTGGAGAATCGTACCCGGAGAGACCTGACGAGCCTGATTGTATTTATTACTTGAGAACCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: RE_066 GGCGGTTAGGGTTGAGCGGCGGCGGCGGAGGTGGAGGAGGTGGAGAATCGTACCCGGAGAGACCTGACGAGCCTGATTGTATTTATCACTTGAGAACCGG 30 40 50 60 70 80 90 100 110 120 210 220 230 240 250 260 270 280 290 300 AT3G06 CGTTTGCGGGTACGGGTCAAGATGTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGGAGAAGCTGGAGCTTTACCGGAGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 CGTTTGCGGGTACGGGTCAAGATGTCGGTTTAATCACCCACGAGATCGTGGAGCGGTTATTGGAGGTGTGAGAGGAGAAGCTGGAGCTTTACCGGAGAGG 130 140 150 160 170 180 190 200 210 220 310 320 330 340 350 360 370 380 390 400 AT3G06 ATGGGACATCCGGTTTGTCAGCATTTTATGCGAACTGGTACGTGTAAATTCGGTGCTTCTTGCAAGTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 ATGGGACATCCGGTTTGTCAGCATTTTATGCGAACTGGTACGTGTAAATTCGGTGCTTCTTGCAAGTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTT 230 240 250 260 270 280 290 300 310 320 410 420 430 440 450 460 470 480 490 500 AT3G06 CCGTTGCGCCTGTCTCGCTAAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCTCTTATTACTTGAGAACCGGTCAGTGTAAATTTGGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 CCGTTGCGCCTGTCTCGCTAAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCTCTTATTACTTGAGAACCGGTCAGTGTAAATTTGGTTT 330 340 350 360 370 380 390 400 410 420 510 520 530 540 550 560 570 580 590 600 AT3G06 GACTTGTAGATTCAACCATCCCGTGCCACTCGCTGTACAGGGTCCACCTCAGCAGCCGCAACAGCAGCAGCCACAGCCACAGCCGCAGCTACAGACTATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 GACTTGTAGATTCAACCATCCCGTGCCACTCGCTGTACAGGGTCCACCTCAGCAGCCGCAACAGCAGCAGCCACAGCCACAGCCGCAGCTACAGACTATT 430 440 450 460 470 480 490 500 510 520 610 620 630 640 650 660 670 680 690 700 AT3G06 TATCCGACACTTCAATCTCAATCTATTCCTTCGTCTCAACAATATGGGTTAGTTTTGACTAGGCCTTCTTTTTTAACTGGTTCATATCTTCAAAGCCCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 TATCCGACACTTCAATCTCAATCTATTCCTTCGTCTCAACAATATGGGTTAGTTTTGACTAGGCCTTCTTTTTTAACTGGTTCATATCTTCAAAGCCCTT 530 540 550 560 570 580 590 600 610 620 710 720 730 740 750 760 770 780 790 800 AT3G06 ACGGTCCTCCAATGGTTCTGCCTCCTGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGGCTTCTTTAAGTGCAATGCCTTCGCCTGGAACTCAACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 ACGGTCCTCCAATGGTTCTGCCTCCTGGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGGCTTCTTTAAGTGCAATGCCTTCGCCTGGAACTCAACC 630 640 650 660 670 680 690 700 710 720 810 820 830 840 850 860 870 880 890 900 AT3G06 GTCTATTGGATCAAGCTCTATTTATGGACTCACGCCGTTATCTCCTTCAGCGACTGCATATACAGGAACATATCAATCTGTGCCTTCTTCAAATTCCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 GTCTATTGGATCAAGCTCTATTTATGGACTCACGCCGTTATCTCCTTCAGCGACTGCATATACAGGAACATATCAATCTGTGCCTTCTTCAAATTCCACC 730 740 750 760 770 780 790 800 810 820 910 920 930 940 950 960 970 980 990 1000 AT3G06 TCAAAAGAGTTTCCTCAGCGACCTGATCAACCCGAGTGTCAATACTTCATGAGAACTGGTGACTGTAAATTCGGATCTTCGTGTCGATACCATCATCCTG ::::::::::::::::::::: :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: RE_066 TCAAAAGAGTTTCCTCAGCGATCTGATCAACCCGAGTGCCAATACTTCATGAGAACTGGTGACTGTAAATTCGGATCTTCGTGCCGATACCATCATCCTG 830 840 850 860 870 880 890 900 910 920 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G06 TAGATGCAGTTCCACCTAAGACTGGCATTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCCGGCGTAGCGCAATGCACTCACTTTGCTCAACACGGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 TAGATGCAGTTCCACCTAAGACTGGCATTGTCCTCAGCTCCATTGGCCTTCCACTTCGTCCCGGCGTAGCGCAATGCACTCACTTTGCTCAACACGGAAT 930 940 950 960 970 980 990 1000 1010 1020 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G06 CTGCAAGTTTGGACCGGCGTGTAAGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACTGATATGCCCGTGGCGCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 CTGCAAGTTTGGACCGGCGTGTAAGTTTGATCACTCAATGAGTTCTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACTGATATGCCCGTGGCGCCA 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G06 TACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCAGTAAGCTCTAGCAATGAACCCACCAAAGAGGCTGTGACTCCTGCAGTTTCTTCTATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 TACCCAATCGGATCATCCTCACTCAGCGGCTCATCAGCTCCAGTAAGCTCTAGCAATGAACCCACCAAAGAGGCTGTGACTCCTGCAGTTTCTTCTATGG 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1310 1320 1330 1340 1350 1360 1370 1380 AT3G06 TCAGTGGCTTGAGCCGTCCTGAGCCAGCTGAGACGAGTGGTGACTCAGCCAGCGTCAGTGGCAGCATAGAAGCTAAGACTTCAAGT :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 TCAGTGGCTTGAGCCGCCCTGAGCCAGCTGAGACGAGTGGTGACTCAGCCAGCGTCAGTGGCAGCATAGAAGCTAAGACTTCAAGT 1230 1240 1250 1260 1270 1280 1290 1300 1310 10 20 30 40 50 60 70 80 90 100 AT3G06 MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPER ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: RE_066 -------------------------MGVFVAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYHLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPER 10 20 30 40 50 60 70 110 120 130 140 150 160 170 180 190 200 AT3G06 MGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 MGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTI 80 90 100 110 120 130 140 150 160 170 210 220 230 240 250 260 270 280 290 300 AT3G06 YPTLQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 YPTLQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNST 180 190 200 210 220 230 240 250 260 270 310 320 330 340 350 360 370 380 390 400 AT3G06 SKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAP ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 SKEFPQRSDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAP 280 290 300 310 320 330 340 350 360 370 410 420 430 440 450 460 AT3G06 YPIGSSSLSGSSAPVSSSNEPTKEAVTPAVSSMVSGLSRPEPAETSGDSASVSGSIEAKTSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_066 YPIGSSSLSGSSAPVSSSNEPTKEAVTPAVSSMVSGLSRPEPAETSGDSASVSGSIEAKTSS 380 390 400 410 420 430

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