◆◆◆RE_0678 detail◆◆◆

Code name	RE_0678
Locus	AT5G18550
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列97.20%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0678_1356bp ATGGAACGGTACGGTGGCGCCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATGGTCCGCTCAAGGAACCGAAACTGGTATCGAAGCTTCGATGT GGCGGTTAGGGTTGCGAGGTGGTGGAGGTGGAGGTGAAACGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTATTTACGAACCGGTGTTTGCGG GTACGGGTCTCGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTCTCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGGACAA CCTGTTTGTCAGCATTTCATGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAAGTATCACCATCCTAGACAAGGAGGAGGAGGAGATTCTGTTACTC CTGTCTCCCTAAATTACATGGGATTCCCATTACGCCCGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCTGTCG ATATCACCATCCAGTCCCTCCTGGTGTACAAGCTCCATCTCAGCAGCAGCAACAACAGTTATCCGCTGGTCCAACTATGTATCCATCGCTTCAGTCTCAA ACCGTTCCTTCATCGCAGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTCTTACCAGGCTCATATGTTCAAAGCCCTTATGGTTACGGTCAAATGGTTC TTCCTCCTGGTATGGTTCCATACTCGGGCTGGAACCCTTACCAGGCTTCTGTAAGTGCGATGCCTTCCCCTGGGACTCAACCGTCAATGGGAACCAGCTC TGTTTATGGAATCACTCCGTTATCTCCCTCAGCGCCTGCTTATCAATCCGGTCCATCTTCTACCGGTGTTTCAAATAAGGAACAAACTTTTCCTCAGCGA CCTGAACAACCTGAGTGTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGAACCTCTTGCAGATTCCATCATCCTATGGAAGCAGCATCGCCAGAGG GCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCTGCAAATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAG CCCATCCCCTTCTTCACTCACGGACATGCCCGTCGCACCTTACCCCTCCTCGCTCGGCACATTAGCTCCATCATCCTCATCTGACCAATGCACTGAGCTT ATCTCTTCCAGCTCTATTGAACCTATAACAACAACAACTGGTGGCTCAGAAACTGTGGCTGCTGGAGTCTCTTCTATGACCAGTGATGTGAGCCATCCCG AGCCTGCTGAGACCAATAAAGGTGATTCAGCTAGCAATGAGGCTAAGACTTCAAGT >RE_0678_translated MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQ PVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQ TVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQR PEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTEL ISSSSIEPITTTTGGSETVAAGVSSMTSDVSHPEPAETNKGDSASNEAKTSS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1356/1395 (97.2%)（アミノ酸配列で452/465 (97.2%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G18 ATGGAACGGTACGGTGGCGCCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATGGTCCGCTCAAGGAACCGAAACTGGTATCGAAGCTTCGATGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 ATGGAACGGTACGGTGGCGCCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATGGTCCGCTCAAGGAACCGAAACTGGTATCGAAGCTTCGATGT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G18 GGCGGTTAGGGTTGCGAGGTGGTGGAGGTGGAGGTGAAACGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTATTTACGAACCGGTGTTTGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 GGCGGTTAGGGTTGCGAGGTGGTGGAGGTGGAGGTGAAACGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTATTTACGAACCGGTGTTTGCGG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G18 GTACGGGTCTCGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTCTCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGGACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 GTACGGGTCTCGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTCTCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGGACAA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G18 CCTGTTTGTCAGCATTTCATGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAAGTATCACCATCCTAGACAAGGAGGAGGAGGAGATTCTGTTACTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 CCTGTTTGTCAGCATTTCATGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAAGTATCACCATCCTAGACAAGGAGGAGGAGGAGATTCTGTTACTC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G18 CTGTCTCCCTAAATTACATGGGATTCCCATTACGCCCGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCTGTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 CTGTCTCCCTAAATTACATGGGATTCCCATTACGCCCGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCTGTCG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G18 ATATCACCATCCAGTCCCTCCTGGTGTACAAGCTCCATCTCAGCAGCAGCAACAACAGTTATCCGCTGGTCCAACTATGTATCCATCGCTTCAGTCTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 ATATCACCATCCAGTCCCTCCTGGTGTACAAGCTCCATCTCAGCAGCAGCAACAACAGTTATCCGCTGGTCCAACTATGTATCCATCGCTTCAGTCTCAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G18 ACCGTTCCTTCATCGCAGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTCTTACCAGGCTCATATGTTCAAAGCCCTTATGGTTACGGTCAAATGGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 ACCGTTCCTTCATCGCAGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTCTTACCAGGCTCATATGTTCAAAGCCCTTATGGTTACGGTCAAATGGTTC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G18 TTCCTCCTGGTATGGTTCCATACTCGGGCTGGAACCCTTACCAGGCTTCTGTAAGTGCGATGCCTTCCCCTGGGACTCAACCGTCAATGGGAACCAGCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 TTCCTCCTGGTATGGTTCCATACTCGGGCTGGAACCCTTACCAGGCTTCTGTAAGTGCGATGCCTTCCCCTGGGACTCAACCGTCAATGGGAACCAGCTC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G18 TGTTTATGGAATCACTCCGTTATCTCCCTCAGCGCCTGCTTATCAATCCGGTCCATCTTCTACCGGTGTTTCAAATAAGGAACAAACTTTTCCTCAGCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 TGTTTATGGAATCACTCCGTTATCTCCCTCAGCGCCTGCTTATCAATCCGGTCCATCTTCTACCGGTGTTTCAAATAAGGAACAAACTTTTCCTCAGCGA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G18 CCTGAACAACCTGAGTGTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGAACCTCTTGCAGATTCCATCATCCTATGGAAGCAGCATCGCCAGAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 CCTGAACAACCTGAGTGTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGAACCTCTTGCAGATTCCATCATCCTATGGAAGCAGCATCGCCAGAG- 910 920 930 940 950 960 970 980 990 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G18 CAAGTACCCTCAGCCACATTGGCCTCCCACTTCGTCCCGGCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCTGCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 --------------------------------------GGCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCTGCAA 1000 1010 1020 1030 1040 1050 1060 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G18 ATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAGCCCATCCCCTTCTTCACTCACGGACATGCCCGTCGCACCTTACCCCTCCTCGCTCGGCACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 ATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAGCCCATCCCCTTCTTCACTCACGGACATGCCCGTCGCACCTTACCCCTCCTCGCTCGGCACA 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G18 TTAGCTCCATCATCCTCATCTGACCAATGCACTGAGCTTATCTCTTCCAGCTCTATTGAACCTATAACAACAACAACTGGTGGCTCAGAAACTGTGGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 TTAGCTCCATCATCCTCATCTGACCAATGCACTGAGCTTATCTCTTCCAGCTCTATTGAACCTATAACAACAACAACTGGTGGCTCAGAAACTGTGGCTG 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1310 1320 1330 1340 1350 1360 1370 1380 1390 AT5G18 CTGGAGTCTCTTCTATGACCAGTGATGTGAGCCATCCCGAGCCTGCTGAGACCAATAAAGGTGATTCAGCTAGCAATGAGGCTAAGACTTCAAGT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 CTGGAGTCTCTTCTATGACCAGTGATGTGAGCCATCCCGAGCCTGCTGAGACCAATAAAGGTGATTCAGCTAGCAATGAGGCTAAGACTTCAAGT 1270 1280 1290 1300 1310 1320 1330 1340 1350 10 20 30 40 50 60 70 80 90 100 AT5G18 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G18 PVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 PVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQ 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G18 TVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 TVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQR 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G18 PEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYPSSLGT ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 PEQPECQYFMRTGDCKFGTSCRFHHPMEAASPE-------------GAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYPSSLGT 310 320 330 340 350 360 370 380 410 420 430 440 450 460 AT5G18 LAPSSSSDQCTELISSSSIEPITTTTGGSETVAAGVSSMTSDVSHPEPAETNKGDSASNEAKTSS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_067 LAPSSSSDQCTELISSSSIEPITTTTGGSETVAAGVSSMTSDVSHPEPAETNKGDSASNEAKTSS 390 400 410 420 430 440 450

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