| Code name | RE_0712 | |||
|---|---|---|---|---|
| Locus | AT3G24500 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.30%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0712_444bp ATGCCGAGCAGATACCCAGGAGCAGTAACACAAGACTGGGAACCAGTAGTTCTCCACAAATCAAAACAAAAGAGCCAAGACCTACGCGATCCGAAAGCGG TTAACGCAGCTCTGAGAAACGGTGTCGCGGTTCAAACGGTTAAGAAATTCGATGCCGGTTCGAACAAAAAGGGGAAATCTACGGCGGTTCCGGTGACTAA CACGAAGAAGCTGGAAGAAGAAACAGAGCCTGCGGCGATGGATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAAGATG TCACAAGCGGATTTGGCGAAACAGATCAATGAGAGGACTCAGGTAGTTCAGGAATATGAGAATGGTAAAGCTGTTCCTAATCAGGCTGTGCTTGCGAAGA TGGAGAAGGTTCTAGGTGTTAAACTTAGGGGTAAAATTGGGAAA >RE_0712_translated MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVTNTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKM SQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKIGK |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 443/444 (99.8%)（アミノ酸配列で147/148 (99.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G24 ATGCCGAGCAGATACCCAGGAGCAGTAACACAAGACTGGGAACCAGTAGTTCTCCACAAATCAAAACAAAAGAGCCAAGACCTACGCGATCCGAAAGCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_071 ATGCCGAGCAGATACCCAGGAGCAGTAACACAAGACTGGGAACCAGTAGTTCTCCACAAATCAAAACAAAAGAGCCAAGACCTACGCGATCCGAAAGCGG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G24 TTAACGCAGCTCTGAGAAACGGTGTCGCGGTTCAAACGGTTAAGAAATTCGATGCCGGTTCGAACAAAAAGGGGAAATCTACGGCGGTTCCGGTGATTAA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
RE_071 TTAACGCAGCTCTGAGAAACGGTGTCGCGGTTCAAACGGTTAAGAAATTCGATGCCGGTTCGAACAAAAAGGGGAAATCTACGGCGGTTCCGGTGACTAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G24 CACGAAGAAGCTGGAAGAAGAAACAGAGCCTGCGGCGATGGATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAAGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_071 CACGAAGAAGCTGGAAGAAGAAACAGAGCCTGCGGCGATGGATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAAGATG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G24 TCACAAGCGGATTTGGCGAAACAGATCAATGAGAGGACTCAGGTAGTTCAGGAATATGAGAATGGTAAAGCTGTTCCTAATCAGGCTGTGCTTGCGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_071 TCACAAGCGGATTTGGCGAAACAGATCAATGAGAGGACTCAGGTAGTTCAGGAATATGAGAATGGTAAAGCTGTTCCTAATCAGGCTGTGCTTGCGAAGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440
AT3G24 TGGAGAAGGTTCTAGGTGTTAAACTTAGGGGTAAAATTGGGAAA
::::::::::::::::::::::::::::::::::::::::::::
RE_071 TGGAGAAGGTTCTAGGTGTTAAACTTAGGGGTAAAATTGGGAAA
410 420 430 440
10 20 30 40 50 60 70 80 90 100
AT3G24 MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
RE_071 MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVTNTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKM
10 20 30 40 50 60 70 80 90 100
110 120 130 140
AT3G24 SQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKIGK
::::::::::::::::::::::::::::::::::::::::::::::::
RE_071 SQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKIGK
110 120 130 140
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