| Code name | RE_0783 | |||
|---|---|---|---|---|
| Locus | AT5G13080 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.30%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0783_435bp ATGGAGGGATATGATAATGGGTCGTTGTATGCTCCTTTTTTGTCGTTGAAATCTCATTCGAAACCAGAGCTGCATCAAGGCGAAGAAGAGAGCTCAAAGG TTAGATCAGAAGGTTGTTCGAAAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTTCAAACAAGGAGCCAAGTGGATATTCTTGA TGATGGTTATCGATGGAGGAAATATGGCCAAAAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGTACATATGGAGGATGCAATGTGAGG AAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTACGAAGGAGTGCATTCGCATCCCATCGAGAAATCCACCGAAAACTTCGAGC ATATTCTCACTCAAATGCAAATCTACTCTTCTTTC >RE_0783_translated MEGYDNGSLYAPFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVR KQVQRLTVDQEVVVTTYEGVHSHPIEKSTENFEHILTQMQIYSSF |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 434/435 (99.8%)（アミノ酸配列で144/145 (99.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G13 ATGGAGGGATATGATAATGGGTCGTTGTATGCTCCTTTTTTGTCGTTGAAATCTCATTCGAAACCAGAGCTGCATCAAGGCGAAGAAGAGAGCTCAAAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_078 ATGGAGGGATATGATAATGGGTCGTTGTATGCTCCTTTTTTGTCGTTGAAATCTCATTCGAAACCAGAGCTGCATCAAGGCGAAGAAGAGAGCTCAAAGG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G13 TTAGATCAGAAGGTTGTTCGAAAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTTCAAACAAGGAGCCAAGTGGATATTCTTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_078 TTAGATCAGAAGGTTGTTCGAAAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTTCAAACAAGGAGCCAAGTGGATATTCTTGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G13 TGATGGTTATCGATGGAGGAAATATGGCCAAAAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGTACATATGGAGGATGCAATGTGAAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
RE_078 TGATGGTTATCGATGGAGGAAATATGGCCAAAAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGTACATATGGAGGATGCAATGTGAGG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G13 AAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTACGAAGGAGTGCATTCGCATCCCATCGAGAAATCCACCGAAAACTTCGAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_078 AAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTACGAAGGAGTGCATTCGCATCCCATCGAGAAATCCACCGAAAACTTCGAGC
310 320 330 340 350 360 370 380 390 400
410 420 430
AT5G13 ATATTCTCACTCAAATGCAAATCTACTCTTCTTTC
:::::::::::::::::::::::::::::::::::
RE_078 ATATTCTCACTCAAATGCAAATCTACTCTTCTTTC
410 420 430
10 20 30 40 50 60 70 80 90 100
AT5G13 MEGYDNGSLYAPFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
RE_078 MEGYDNGSLYAPFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVR
10 20 30 40 50 60 70 80 90 100
110 120 130 140
AT5G13 KQVQRLTVDQEVVVTTYEGVHSHPIEKSTENFEHILTQMQIYSSF
:::::::::::::::::::::::::::::::::::::::::::::
RE_078 KQVQRLTVDQEVVVTTYEGVHSHPIEKSTENFEHILTQMQIYSSF
110 120 130 140
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