| Code name | RE_0794 | |||
|---|---|---|---|---|
| Locus | AT1G49480 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_03G12_x | |||
| sequence |
>RE_0794_678bp ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTG AATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAA GAGAGGAAGGGAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCT TCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGC GACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGG TGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGA GATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTG >RE_0794_translated MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGREKKNPNPEEVNSSTPGGDDSENRSKFYESA SARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEG DVCVFELLRTRDFVLEVTAFRVNEYV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 677/678 (99.9%)（アミノ酸配列で225/226 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G49 ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 ATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGATCCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G49 AATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 AATCTACTGAACCAGTGAATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAAGAAACGCCCAAGGTACTTAAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G49 GAGAGGAAGGAAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCT
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 GAGAGGAAGGGAGAAGAAGAATCCTAATCCCGAGGAAGTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGTGCT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G49 TCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 TCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCCAAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G49 GACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 GACCATCATATCTATACAGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCTGGTTTCATCAAGCTCCAGCTCGG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G49 TGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 TGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCAGGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAAGGA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670
AT1G49 GATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 GATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAAGTCACCGCCTTTCGTGTCAATGAGTATGTG
610 620 630 640 650 660 670
10 20 30 40 50 60 70 80 90 100
AT1G49 MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
RE_079 MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGREKKNPNPEEVNSSTPGGDDSENRSKFYESA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G49 SARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_079 SARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEG
110 120 130 140 150 160 170 180 190 200
210 220
AT1G49 DVCVFELLRTRDFVLEVTAFRVNEYV
::::::::::::::::::::::::::
RE_079 DVCVFELLRTRDFVLEVTAFRVNEYV
210 220
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