◆◆◆RE_0802 detail◆◆◆

Code name	RE_0802
Locus	AT4G31610
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	(manual:802_1F/0708_20080115_0802W1/Rrc)
sequence	>RE_0802_1551bp ATGGCGGATCCACCACATTTCTCTCTGTTTCAGCAAAAATTTCGTACCGGAGACAAACCATTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGA AAGTGTTACTAAAATCGGATGCTTCAGACAAAGTTTGGAAAGTGAAACTGGACGGCGGTAGGCTCTCCGAAGGCTGGGAAGAGTTCGCCTGCGACCAGAA ATTCAGAGACGGTGACGTTTTGGTTTTCAAACATCATGGAGACGAGGTCTTTCATGTAGCTGTGGTGTCCCCATCTGTTTCCGGCGACATACGTAACGCA TCTTCTAGCCAAGTTATTACGGAAGATACTTATATTGATGTTGACGATGTTGATGATGATGATTATGGACAAGACGACGAAGATGATGATGATGATGATG ATGAGGGCGAGGATAATATAGAGAACATATCGGAGAAGACGGATAAAAGACAAGAAGCAGATTCTTCATCAGACCACTCAGGTTTCATCACAGCACGTGT CACTCGTTATAGCCTCCTTCATGACCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGCACCAAAAAACATGTGAGATCGATGTAGTGGAT GAGCAAGGGAGAAGATGGACAATGAAACTTGCCAAAAACATCTCAAGTGGTGTGTTTTACATCAGACTAGGCTGGGGAAACTTCTGCTGCGCTAATGGGC TAACTCAAGGAGACTTATGTAAGTTTAAACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTGGTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAA GAGGACGTTTGATGAAGTTTCCAAAGGAAAGGAGAAGAAGACCCCTTCACCACTTCTGATAGTAAAGTATACACCTAGCCGTGAGACTACCGGGCAACTA TCACTTCCAGTGAGTTTCACGAGGAACAATAGCATTAATAAGACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGA TAACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTGGGAGTAAATGATTCTTT CAAGCTGGAACTGGTGTGGGAAGGAGCTAATCCTATGTTTAAGTTCTGCTCCAAGATTGAAAACCATGAATACAAGGGAAAAGGAAACCAAAGAACTCGT AAGAAGAGAGCTTGTGAGACTGCTCCACAGCCAAGGAATGTGAAAAAGACTCCAAGATTAGGAGTAGAGGGACCAGTGTATCAAGTTGATGAGGAGAGAG GACACACTCAGGTTTCAAACAGAACCAACACCATCTCAGGAAATTTACAGCGCTTGCTACCACCATCGTGCTCAGTCTCCGATCAGGTGGCTAATGTGAA ACAGGGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAACAAAATCTGCAAGCCTCTTTGCTAGCAATTGACGCC TTAGGGGAGAGGATATGGGGAATCAGCAAAATCCTCAGCAGTAATCTGGTT >RE_0802_translated MADPPHFSLFQQKFRTGDKPFLTLDADFLMNHTKVLLKSDASDKVWKVKLDGGRLSEGWEEFACDQKFRDGDVLVFKHHGDEVFHVAVVSPSVSGDIRNA SSSQVITEDTYIDVDDVDDDDYGQDDEDDDDDDDEGEDNIENISEKTDKRQEADSSSDHSGFITARVTRYSLLHDRLDLSRNFTLLFGGHQKTCEIDVVD EQGRRWTMKLAKNISSGVFYIRLGWGNFCCANGLTQGDLCKFKLFQNEERPVLWLCPQESGNGRKEKRTFDEVSKGKEKKTPSPLLIVKYTPSRETTGQL SLPVSFTRNNSINKTGEVILLNQDGRKWSSYLQITGLGRGAGSEWFYLRRGWREMCEANGVGVNDSFKLELVWEGANPMFKFCSKIENHEYKGKGNQRTR KKRACETAPQPRNVKKTPRLGVEGPVYQVDEERGHTQVSNRTNTISGNLQRLLPPSCSVSDQVANVKQGIVDSLNTVRQCRTELETSEQNLQASLLAIDA LGERIWGISKILSSNLV
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1550/1551 (99.9%)（アミノ酸配列で516/517 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G31 ATGGCGGATCCACCACATTTCTCTCTGTTTCAGCAAAAATTTCGTACCGGAGACAAACCATTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ATGGCGGATCCACCACATTTCTCTCTGTTTCAGCAAAAATTTCGTACCGGAGACAAACCATTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G31 AAGTGTTACTAAAATCGGATGCTTCAGACAAAGTTTGGAAAGTGAAACTGGACGGCGGTAGGCTCTCCGAAGGCTGGGAAGAGTTCGCCTGCGACCAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 AAGTGTTACTAAAATCGGATGCTTCAGACAAAGTTTGGAAAGTGAAACTGGACGGCGGTAGGCTCTCCGAAGGCTGGGAAGAGTTCGCCTGCGACCAGAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G31 ATTCAGAGACGGTGACGTTTTGGTTTTCAAACATCATGGAGACGAGGTCTTTCATGTAGCTGTGGTGTCCCCATCTGTTTCCGGCGACATACGTAACGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ATTCAGAGACGGTGACGTTTTGGTTTTCAAACATCATGGAGACGAGGTCTTTCATGTAGCTGTGGTGTCCCCATCTGTTTCCGGCGACATACGTAACGCA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G31 TCTTCTAGCCAAGTTATTACGGAAGATACTTATATTGATGTTGACGATGTTGATGATGATGATTATGGACAAGACGACGAAGATGATGATGATGATGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TCTTCTAGCCAAGTTATTACGGAAGATACTTATATTGATGTTGACGATGTTGATGATGATGATTATGGACAAGACGACGAAGATGATGATGATGATGATG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G31 ATGAGGGCGAGGATAATATAGAGAACATATCGGAGAAGACGGATAAAAGACAAGAAGCAGATTCTTCATCAGACCACTCAGGTTTCATCACAGCACGTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ATGAGGGCGAGGATAATATAGAGAACATATCGGAGAAGACGGATAAAAGACAAGAAGCAGATTCTTCATCAGACCACTCAGGTTTCATCACAGCACGTGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G31 CACTCGTTATAGCCTCCTTCATGACCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGCACCAAAAAACATGTGAGATCGATGTAGTGGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 CACTCGTTATAGCCTCCTTCATGACCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGCACCAAAAAACATGTGAGATCGATGTAGTGGAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G31 GAGCAAGGGAGAAGATGGACAATGAAACTTGCCAAAAACATCTCAAGTGGTGTGTTTTACATCAGACTAGGCTGGGGAAACTTCTGCTGCGCTAATGGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 GAGCAAGGGAGAAGATGGACAATGAAACTTGCCAAAAACATCTCAAGTGGTGTGTTTTACATCAGACTAGGCTGGGGAAACTTCTGCTGCGCTAATGGGC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G31 TAACTCAAGGAGACTTATGTAAGTTTAAACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTGGTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TAACTCAAGGAGACTTATGTAAGTTTAAACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTGGTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G31 GAGGACGTTTGATGAAGTTTCCAAAGGAAAGGAGAAGAAGACCCCTTCACCATTTCTGATAGTAAAGTATACACCTAGCCGTGAGACTACCGGGCAACTA :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: RE_080 GAGGACGTTTGATGAAGTTTCCAAAGGAAAGGAGAAGAAGACCCCTTCACCACTTCTGATAGTAAAGTATACACCTAGCCGTGAGACTACCGGGCAACTA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G31 TCACTTCCAGTGAGTTTCACGAGGAACAATAGCATTAATAAGACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TCACTTCCAGTGAGTTTCACGAGGAACAATAGCATTAATAAGACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G31 TAACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTGGGAGTAAATGATTCTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TAACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTGGGAGTAAATGATTCTTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G31 CAAGCTGGAACTGGTGTGGGAAGGAGCTAATCCTATGTTTAAGTTCTGCTCCAAGATTGAAAACCATGAATACAAGGGAAAAGGAAACCAAAGAACTCGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 CAAGCTGGAACTGGTGTGGGAAGGAGCTAATCCTATGTTTAAGTTCTGCTCCAAGATTGAAAACCATGAATACAAGGGAAAAGGAAACCAAAGAACTCGT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G31 AAGAAGAGAGCTTGTGAGACTGCTCCACAGCCAAGGAATGTGAAAAAGACTCCAAGATTAGGAGTAGAGGGACCAGTGTATCAAGTTGATGAGGAGAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 AAGAAGAGAGCTTGTGAGACTGCTCCACAGCCAAGGAATGTGAAAAAGACTCCAAGATTAGGAGTAGAGGGACCAGTGTATCAAGTTGATGAGGAGAGAG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G31 GACACACTCAGGTTTCAAACAGAACCAACACCATCTCAGGAAATTTACAGCGCTTGCTACCACCATCGTGCTCAGTCTCCGATCAGGTGGCTAATGTGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 GACACACTCAGGTTTCAAACAGAACCAACACCATCTCAGGAAATTTACAGCGCTTGCTACCACCATCGTGCTCAGTCTCCGATCAGGTGGCTAATGTGAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G31 ACAGGGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAACAAAATCTGCAAGCCTCTTTGCTAGCAATTGACGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ACAGGGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAACAAAATCTGCAAGCCTCTTTGCTAGCAATTGACGCC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 AT4G31 TTAGGGGAGAGGATATGGGGAATCAGCAAAATCCTCAGCAGTAATCTGGTT ::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TTAGGGGAGAGGATATGGGGAATCAGCAAAATCCTCAGCAGTAATCTGGTT 1510 1520 1530 1540 1550 10 20 30 40 50 60 70 80 90 100 AT4G31 MADPPHFSLFQQKFRTGDKPFLTLDADFLMNHTKVLLKSDASDKVWKVKLDGGRLSEGWEEFACDQKFRDGDVLVFKHHGDEVFHVAVVSPSVSGDIRNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 MADPPHFSLFQQKFRTGDKPFLTLDADFLMNHTKVLLKSDASDKVWKVKLDGGRLSEGWEEFACDQKFRDGDVLVFKHHGDEVFHVAVVSPSVSGDIRNA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G31 SSSQVITEDTYIDVDDVDDDDYGQDDEDDDDDDDEGEDNIENISEKTDKRQEADSSSDHSGFITARVTRYSLLHDRLDLSRNFTLLFGGHQKTCEIDVVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 SSSQVITEDTYIDVDDVDDDDYGQDDEDDDDDDDEGEDNIENISEKTDKRQEADSSSDHSGFITARVTRYSLLHDRLDLSRNFTLLFGGHQKTCEIDVVD 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G31 EQGRRWTMKLAKNISSGVFYIRLGWGNFCCANGLTQGDLCKFKLFQNEERPVLWLCPQESGNGRKEKRTFDEVSKGKEKKTPSPFLIVKYTPSRETTGQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: RE_080 EQGRRWTMKLAKNISSGVFYIRLGWGNFCCANGLTQGDLCKFKLFQNEERPVLWLCPQESGNGRKEKRTFDEVSKGKEKKTPSPLLIVKYTPSRETTGQL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G31 SLPVSFTRNNSINKTGEVILLNQDGRKWSSYLQITGLGRGAGSEWFYLRRGWREMCEANGVGVNDSFKLELVWEGANPMFKFCSKIENHEYKGKGNQRTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 SLPVSFTRNNSINKTGEVILLNQDGRKWSSYLQITGLGRGAGSEWFYLRRGWREMCEANGVGVNDSFKLELVWEGANPMFKFCSKIENHEYKGKGNQRTR 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G31 KKRACETAPQPRNVKKTPRLGVEGPVYQVDEERGHTQVSNRTNTISGNLQRLLPPSCSVSDQVANVKQGIVDSLNTVRQCRTELETSEQNLQASLLAIDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 KKRACETAPQPRNVKKTPRLGVEGPVYQVDEERGHTQVSNRTNTISGNLQRLLPPSCSVSDQVANVKQGIVDSLNTVRQCRTELETSEQNLQASLLAIDA 410 420 430 440 450 460 470 480 490 500 510 AT4G31 LGERIWGISKILSSNLV ::::::::::::::::: RE_080 LGERIWGISKILSSNLV 510

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