◆◆◆RE_0805 detail◆◆◆

Code name	RE_0805
Locus	AT4G34400
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0424_アミノ酸配列70%以上一致, AT4G34400.2_by_RIKE読まれた配列に有N
sequence	>RE_0805_1191bp ATGGCCTCTTCAATGGCTAGCAATGATTTCCAGCTCCCTCCACGTTTCTTCACTGTTTTCGTCTCCCATTTCAGCTCAGAGTTCATGGTGATCCCAGTTT CCTACTACGATCACATTCCACATCGTTTCCCCAAGACTGTGATTCTCCGAGGACCTGGTGGATGCTCCTGGAAGGTAGCGACGGAGATAAAGGATGATGA AGTGCTTTTTTCACAAGGATGGCCCAAATTTGTTCGGGATAATACTCTTAACGATGGAGACTTTTTGACCTTTGCCTATTATGGAGCTCACATATTCGAG GTCAGTATCTTTCGCGGCTACTACGCATGTAAAGAGATTAGCGAAGTCACTGAATTGGAAGAGGAAGAAGAAGACAGTGTTATATCTCTGAGCAGTGAAG ACACAGACACTGGTGCTAAATCTGAGATGAAGAATACAGTCCCGGAAGGCAGAGACAAAGGAAAGTCAAAAGTGGAAGTTGTGGAGGATTCTGATGACGA TGAGGAGGAGGATAGTGTTTATTCTGAAAGCAGTGAAGAAACAGAGACAGACACTGATTCTGAATTCAAGGTGGCCAAGCCAACAATACCAAAAAGCCAG AAGAAAGGAAAGAAGAAAGAACAAGTTGTGGAGTCCTCTGATGACGAGGAAGACGAAGAGGAGGACAGTGACAGTGATTACATTGAAACGTTTGGTCAAT TGGATATTGAAGAGAATTCCATCAGTGAGGAGGACAGTTCTTATGCTCCTGATAAAGAAGACACAGCCACTGCCTCTTTTGTCAAACCAAAGGTTGCAAA TAAGGTTGCTAATCTGAAGAGGAAAGAGGCGGCAAAGAAGAGGAAGAAAGTCGATCCCATGATCAAGAATCCTGAGAGATACCTCGATGATCCTAAGAAT ATCCATTTCGAGACAAACGTGAAGAATAGGTTATACGAGCTGTTGGTTCATGCACAACTGGTGAAAGACTATTGCTTGAGGTTTGGAGACTATGTTAACT ACATCGACAGGTTCGGGAAACTAAGTGCTAAAACAGCCAAATGGAAGGATCAGCGTGTTTGTATCAAAAGATGGATGCGCATATGCAAGAGGAACAAGTT GAAGAAAGAAGACCGCATTTTGTGTGAGCTCTTGCGCAAGGGAACTTTCGTTTACGCAATCAAACTCCATGTCATCCGCGGTAAGGATCTG >RE_0805_translated MASSMASNDFQLPPRFFTVFVSHFSSEFMVIPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYYGAHIFE VSIFRGYYACKEISEVTELEEEEEDSVISLSSEDTDTGAKSEMKNTVPEGRDKGKSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQ KKGKKKEQVVESSDDEEDEEEDSDSDYIETFGQLDIEENSISEEDSSYAPDKEDTATASFVKPKVANKVANLKRKEAAKKRKKVDPMIKNPERYLDDPKN IHFETNVKNRLYELLVHAQLVKDYCLRFGDYVNYIDRFGKLSAKTAKWKDQRVCIKRWMRICKRNKLKKEDRILCELLRKGTFVYAIKLHVIRGKDL
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1189/1191 (99.8%)（アミノ酸配列で395/397 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G34 ATGGCCTCTTCAATGGCTAGCAATGATTTCCAGCTCCCTCCACGTTTCTTCACTGTTTTCGTCTCCCATTTCAGCTCAGAGTTCATGGTGATCCCAGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ATGGCCTCTTCAATGGCTAGCAATGATTTCCAGCTCCCTCCACGTTTCTTCACTGTTTTCGTCTCCCATTTCAGCTCAGAGTTCATGGTGATCCCAGTTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G34 CCTACTACGATCACATTCCACATCGTTTCCCCAAGACTGTGATTCTCCGAGGACCTGGTGGATGCTCCTGGAAGGTAGCGACGGAGATAAAGGATGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 CCTACTACGATCACATTCCACATCGTTTCCCCAAGACTGTGATTCTCCGAGGACCTGGTGGATGCTCCTGGAAGGTAGCGACGGAGATAAAGGATGATGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G34 AGTGCTTTTTTCACAAGGATGGCCCAAATTTGTTCGGGATAATACTCTTAACGATGGAGACTTTTTGACCTTTGCCTATAATGGAGCTCACATATTCGAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: RE_080 AGTGCTTTTTTCACAAGGATGGCCCAAATTTGTTCGGGATAATACTCTTAACGATGGAGACTTTTTGACCTTTGCCTATTATGGAGCTCACATATTCGAG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G34 GTCAGTATCTTTCGCGGCTACGACGCATGTAAAGAGATTAGCGAAGTCACTGAATTGGAAGAGGAAGAAGAAGACAGTGTTATATCTCTGAGCAGTGAAG ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 GTCAGTATCTTTCGCGGCTACTACGCATGTAAAGAGATTAGCGAAGTCACTGAATTGGAAGAGGAAGAAGAAGACAGTGTTATATCTCTGAGCAGTGAAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G34 ACACAGACACTGGTGCTAAATCTGAGATGAAGAATACAGTCCCGGAAGGCAGAGACAAAGGAAAGTCAAAAGTGGAAGTTGTGGAGGATTCTGATGACGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ACACAGACACTGGTGCTAAATCTGAGATGAAGAATACAGTCCCGGAAGGCAGAGACAAAGGAAAGTCAAAAGTGGAAGTTGTGGAGGATTCTGATGACGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G34 TGAGGAGGAGGATAGTGTTTATTCTGAAAGCAGTGAAGAAACAGAGACAGACACTGATTCTGAATTCAAGGTGGCCAAGCCAACAATACCAAAAAGCCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TGAGGAGGAGGATAGTGTTTATTCTGAAAGCAGTGAAGAAACAGAGACAGACACTGATTCTGAATTCAAGGTGGCCAAGCCAACAATACCAAAAAGCCAG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G34 AAGAAAGGAAAGAAGAAAGAACAAGTTGTGGAGTCCTCTGATGACGAGGAAGACGAAGAGGAGGACAGTGACAGTGATTACATTGAAACGTTTGGTCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 AAGAAAGGAAAGAAGAAAGAACAAGTTGTGGAGTCCTCTGATGACGAGGAAGACGAAGAGGAGGACAGTGACAGTGATTACATTGAAACGTTTGGTCAAT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G34 TGGATATTGAAGAGAATTCCATCAGTGAGGAGGACAGTTCTTATGCTCCTGATAAAGAAGACACAGCCACTGCCTCTTTTGTCAAACCAAAGGTTGCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TGGATATTGAAGAGAATTCCATCAGTGAGGAGGACAGTTCTTATGCTCCTGATAAAGAAGACACAGCCACTGCCTCTTTTGTCAAACCAAAGGTTGCAAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G34 TAAGGTTGCTAATCTGAAGAGGAAAGAGGCGGCAAAGAAGAGGAAGAAAGTCGATCCCATGATCAAGAATCCTGAGAGATACCTCGATGATCCTAAGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TAAGGTTGCTAATCTGAAGAGGAAAGAGGCGGCAAAGAAGAGGAAGAAAGTCGATCCCATGATCAAGAATCCTGAGAGATACCTCGATGATCCTAAGAAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G34 ATCCATTTCGAGACAAACGTGAAGAATAGGTTATACGAGCTGTTGGTTCATGCACAACTGGTGAAAGACTATTGCTTGAGGTTTGGAGACTATGTTAACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ATCCATTTCGAGACAAACGTGAAGAATAGGTTATACGAGCTGTTGGTTCATGCACAACTGGTGAAAGACTATTGCTTGAGGTTTGGAGACTATGTTAACT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G34 ACATCGACAGGTTCGGGAAACTAAGTGCTAAAACAGCCAAATGGAAGGATCAGCGTGTTTGTATCAAAAGATGGATGCGCATATGCAAGAGGAACAAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ACATCGACAGGTTCGGGAAACTAAGTGCTAAAACAGCCAAATGGAAGGATCAGCGTGTTTGTATCAAAAGATGGATGCGCATATGCAAGAGGAACAAGTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT4G34 GAAGAAAGAAGACCGCATTTTGTGTGAGCTCTTGCGCAAGGGAACTTTCGTTTACGCAATCAAACTCCATGTCATCCGCGGTAAGGATCTG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 GAAGAAAGAAGACCGCATTTTGTGTGAGCTCTTGCGCAAGGGAACTTTCGTTTACGCAATCAAACTCCATGTCATCCGCGGTAAGGATCTG 1110 1120 1130 1140 1150 1160 1170 1180 1190 10 20 30 40 50 60 70 80 90 100 AT4G34 MASSMASNDFQLPPRFFTVFVSHFSSEFMVIPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYNGAHIFE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: RE_080 MASSMASNDFQLPPRFFTVFVSHFSSEFMVIPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYYGAHIFE 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G34 VSIFRGYDACKEISEVTELEEEEEDSVISLSSEDTDTGAKSEMKNTVPEGRDKGKSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQ ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 VSIFRGYYACKEISEVTELEEEEEDSVISLSSEDTDTGAKSEMKNTVPEGRDKGKSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQ 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G34 KKGKKKEQVVESSDDEEDEEEDSDSDYIETFGQLDIEENSISEEDSSYAPDKEDTATASFVKPKVANKVANLKRKEAAKKRKKVDPMIKNPERYLDDPKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 KKGKKKEQVVESSDDEEDEEEDSDSDYIETFGQLDIEENSISEEDSSYAPDKEDTATASFVKPKVANKVANLKRKEAAKKRKKVDPMIKNPERYLDDPKN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT4G34 IHFETNVKNRLYELLVHAQLVKDYCLRFGDYVNYIDRFGKLSAKTAKWKDQRVCIKRWMRICKRNKLKKEDRILCELLRKGTFVYAIKLHVIRGKDL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 IHFETNVKNRLYELLVHAQLVKDYCLRFGDYVNYIDRFGKLSAKTAKWKDQRVCIKRWMRICKRNKLKKEDRILCELLRKGTFVYAIKLHVIRGKDL 310 320 330 340 350 360 370 380 390

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