◆◆◆RE_0806 detail◆◆◆

Code name	RE_0806
Locus	AT5G18000
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0229_アミノ酸配列100%一致, AT5G18000.5_by_RIKE読まれた配列に有N
sequence	>RE_0806_921bp ATGGTGAAAAACAAAGCTTTTTTTGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAGGATCACTCGACTGAAATGA TGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGACAAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAA AATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAATGACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACT CATGAGGCAAATATGTGCTTTAATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGAAAAACCATTACTTCTAGTTCCGGTCGGAACA AGAGAGAAGAGAGGAAGAGCATCTACAAAGATGTGAAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCTGAATC TACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCCGATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAA ACTGTTAGTAACGACTCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACACCTTCTGTTCTTGGGGATCCCAAAGA AATTTGTGGATATGCATATGCCAACTGAGACAACGATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCACTGATGT ACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACTGGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATG CGTGTGAAAGTCTCCAAAGAA >RE_0806_translated MVKNKAFFGQIMEERDNPAFFKILRREDHSTEMMRMIPHHLIRSISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYMEDRGWNQFVNDNGLGENEYLTFT HEANMCFNVTIFEADGTEMLRPRKTITSSSGRNKREERKSIYKDVKKEEEIESWSESSHPCHKTAESTSGRLTQKQELNLRKKEADKTEKSKTSKKKKVE TVSNDSEAGTSSLIPEFKLTIKKSHLLFLGIPKKFVDMHMPTETTMFKIHYPRGKKSWDVTYVVTDVQSRFSGGWSRLAKELGLLVGDVCTFKLIKPTEM RVKVSKE
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 919/921 (99.8%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G18 ATGGTGAAAAACAAAGCTTTTTTTGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAAGATCATTCGACTGAAATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: ::::::::::::: RE_080 ATGGTGAAAAACAAAGCTTTTTTTGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAGGATCACTCGACTGAAATGA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G18 TGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGACAAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGACAAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G18 AATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAATGACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 AATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAATGACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G18 CATGAGGCAAATATGTGCTTTAATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGAAAAACCATTACTTCTAGTTCCGGTCGGAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 CATGAGGCAAATATGTGCTTTAATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGAAAAACCATTACTTCTAGTTCCGGTCGGAACA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G18 AGAGAGAAGAGAGGAAGAGCATCTACAAAGATGTGAAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCTGAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 AGAGAGAAGAGAGGAAGAGCATCTACAAAGATGTGAAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCTGAATC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G18 TACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCCGATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCCGATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G18 ACTGTTAGTAACGACTCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACACCTTCTGTTCTTGGGGATCCCAAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ACTGTTAGTAACGACTCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACACCTTCTGTTCTTGGGGATCCCAAAGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G18 AATTTGTGGATATGCATATGCCAACTGAGACAACGATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCACTGATGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 AATTTGTGGATATGCATATGCCAACTGAGACAACGATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCACTGATGT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G18 ACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACTGGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 ACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACTGGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATG 810 820 830 840 850 860 870 880 890 900 910 920 AT5G18 CGTGTGAAAGTCTCCAAAGAA ::::::::::::::::::::: RE_080 CGTGTGAAAGTCTCCAAAGAA 910 920 10 20 30 40 50 60 70 80 90 100 AT5G18 MVKNKAFFGQIMEERDNPAFFKILRREDHSTEMMRMIPHHLIRSISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYMEDRGWNQFVNDNGLGENEYLTFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 MVKNKAFFGQIMEERDNPAFFKILRREDHSTEMMRMIPHHLIRSISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYMEDRGWNQFVNDNGLGENEYLTFT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G18 HEANMCFNVTIFEADGTEMLRPRKTITSSSGRNKREERKSIYKDVKKEEEIESWSESSHPCHKTAESTSGRLTQKQELNLRKKEADKTEKSKTSKKKKVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 HEANMCFNVTIFEADGTEMLRPRKTITSSSGRNKREERKSIYKDVKKEEEIESWSESSHPCHKTAESTSGRLTQKQELNLRKKEADKTEKSKTSKKKKVE 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G18 TVSNDSEAGTSSLIPEFKLTIKKSHLLFLGIPKKFVDMHMPTETTMFKIHYPRGKKSWDVTYVVTDVQSRFSGGWSRLAKELGLLVGDVCTFKLIKPTEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_080 TVSNDSEAGTSSLIPEFKLTIKKSHLLFLGIPKKFVDMHMPTETTMFKIHYPRGKKSWDVTYVVTDVQSRFSGGWSRLAKELGLLVGDVCTFKLIKPTEM 210 220 230 240 250 260 270 280 290 300 AT5G18 RVKVSKE ::::::: RE_080 RVKVSKE

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