| Code name | RE_0808 | |||
|---|---|---|---|---|
| Locus | AT5G25475 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列70.20%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0808_594bp ATGTTGCCTAAGAATGCTATTGAGAAGATCCAAGCAAATGTGAGCAAGCCTTGCTTCTGGAAGTCTCTCTCTCCAGGACAAACTTGGAAATCTAAATCCA TGAGGATAATTCCGGAAGACTTTGTGAGAAGAACGCGTGGTGCTTTTGAGCACAGAGTGGTGTTTAGTGTTCGTTGGGAAAACTCCTGGCAACTCTGGCT GGAGCGAGAGAAGAACGAGCTGTTTATGATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGATAATCTGTTCATCAAACAC GATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAATGGGGTTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATC CTACGCCCAAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTTTGCCTCTGGCTCTGGCTGCTCTGCAAATGGAGGGACAAATGGCCGAGGAAAACA ACGTTCTAGTGATGTCAAAAACCCTGAGCGATACCTCTTGAATCCTGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAGGAACGACGTTCTG >RE_0808_translated MLPKNAIEKIQANVSKPCFWKSLSPGQTWKSKSMRIIPEDFVRRTRGAFEHRVVFSVRWENSWQLWLEREKNELFMIEEDWNEFVDDNHLGPNDNLFIKH DETMNLEVQIFKNNGVEIIDVPLGVEPETEPFHPTPKKPHKETTPASSFASGSGCSANGGTNGRGKQRSSDVKNPERYLLNPENPYFVQAVTKRNDVL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 594/846 (70.2%)（アミノ酸配列で198/282 (70.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G25 ATGTTGCCTAAGAATGCTATTGAGAAGATCCAAGCAAATGTGAGCAAGCCTTGCTTCTGGAAGTCTCTCTCTCCAGGACAAACTTGGAAATCTAAATCCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 ATGTTGCCTAAGAATGCTATTGAGAAGATCCAAGCAAATGTGAGCAAGCCTTGCTTCTGGAAGTCTCTCTCTCCAGGACAAACTTGGAAATCTAAATCCA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G25 TGAGGATAATTCCGGAAGACTTTGTGAGAAGAACGCGTGGTGCTTTTGAGCACAGAGTGGTGTTTAGTGTTCGTTGGGAAAACTCCTGGCAACTCTGGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 TGAGGATAATTCCGGAAGACTTTGTGAGAAGAACGCGTGGTGCTTTTGAGCACAGAGTGGTGTTTAGTGTTCGTTGGGAAAACTCCTGGCAACTCTGGCT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G25 GGAGCGAGAGAAGAACGAGCTGTTTATGATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGATAATCTGTTCATCAAACAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 GGAGCGAGAGAAGAACGAGCTGTTTATGATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGATAATCTGTTCATCAAACAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G25 GATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAATGGGGTTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 GATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAATGGGGTTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G25 CTACGCCCAAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTTTGCCTCTGGCTCTGGCTGCTCTGCAAATGGAGGGACAAATGGCCGAGGAAAACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 CTACGCCCAAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTTTGCCTCTGGCTCTGGCTGCTCTGCAAATGGAGGGACAAATGGCCGAGGAAAACA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G25 ACGTTCTAGTGATGTCAAAAACCCTGAGCGATACCTCTTGAATCCTGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAGGAACGACGTTCTGTATGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 ACGTTCTAGTGATGTCAAAAACCCTGAGCGATACCTCTTGAATCCTGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAGGAACGACGTTCTG------
510 520 530 540 550 560 570 580 590
610 620 630 640 650 660 670 680 690 700
AT5G25 AGCCGACCGGTGGTTCAGAGCTATCGCTTGAAGTTTGGTCCCGTTAAGTCCACCATTACCTATCTTCTTCCCGGGGAGAAAAAAGAGGAAGGCGAGAATA
RE_080 ----------------------------------------------------------------------------------------------------
710 720 730 740 750 760 770 780 790 800
AT5G25 GAATCTATAACGGGAAACCTTGTTTCAGTGGCTGGTCGGTTCTATGTCGGAGGCACAATCTGAATATCGGAGACTCCGTGGTTTGTGAACTTGAACGCTC
RE_080 ----------------------------------------------------------------------------------------------------
810 820 830 840
AT5G25 CGGTGGTGTGGTTACCGCTGTAAGAGTGCATTTCGTCAAGAAAGAC
RE_080 ----------------------------------------------
10 20 30 40 50 60 70 80 90 100
AT5G25 MLPKNAIEKIQANVSKPCFWKSLSPGQTWKSKSMRIIPEDFVRRTRGAFEHRVVFSVRWENSWQLWLEREKNELFMIEEDWNEFVDDNHLGPNDNLFIKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 MLPKNAIEKIQANVSKPCFWKSLSPGQTWKSKSMRIIPEDFVRRTRGAFEHRVVFSVRWENSWQLWLEREKNELFMIEEDWNEFVDDNHLGPNDNLFIKH
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G25 DETMNLEVQIFKNNGVEIIDVPLGVEPETEPFHPTPKKPHKETTPASSFASGSGCSANGGTNGRGKQRSSDVKNPERYLLNPENPYFVQAVTKRNDVLYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_080 DETMNLEVQIFKNNGVEIIDVPLGVEPETEPFHPTPKKPHKETTPASSFASGSGCSANGGTNGRGKQRSSDVKNPERYLLNPENPYFVQAVTKRNDVL--
110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280
AT5G25 SRPVVQSYRLKFGPVKSTITYLLPGEKKEEGENRIYNGKPCFSGWSVLCRRHNLNIGDSVVCELERSGGVVTAVRVHFVKKD
RE_080 ----------------------------------------------------------------------------------
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