Code name | RE_0819 | |||
---|---|---|---|---|
Locus | AT1G72830 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.70%一致 | |||
comment | 0314_アミノ酸配列70%以上一致 | |||
sequence |
>RE_0819_1020bp ATGATGCATCAGATGTTGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTTGGGGAGTGGTTCCAACTGATTCCG TTGCTAATCGTCGCGGTTCTGCTGAATCACTAAGCTTGAAGGTTGATTCAAGACCTGGGCATATACAAACTACAAAGCAAATCATTTTTCAGGACCAAGA TTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTAGTGGTGATGATAATCCTTCCAGACAAATCTCCTTTTCGGCTAAATCAGGA TCTGAAATAACTCAACGGAAGGGGTTTGCAAGTAATCCTAAACAAGGCTCGATGACTGGATTTCCGAATATTCACTTTGCTCCTGCACAGGCTAATTTCT CATTTCACTATGCTGATCCACATTATGGTGGTTTATTAGCTGCAACTTACCTACCACAGGCACCAACATGCAATCCTCAAATGGTGAGTATGATTCCTGG TCGTGTTCCTTTACCAGCAGAGCTCACAGAAACTGATCCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAG CTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGCCCTATCTTCATGAGTCTCGACATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGAT TCCTAAACACCAAAAAACTTCTTCAAGAATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGTTAGGCCAACAGGTAAACAGAAAGACCAACAT GTCTAGATTCGAAGCTCATATGCTGCAGAACAACAAAGACCGCAGCTCAACCACTTCTGGCTCAGACATCACCTCTGTTTCCGACGGTGCTGATATCTTT GGACACACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATAAACCGAGCCATGCTTGTTCATGGTCAGTCTAATGACATGCATGGAGGTGGAGACATGC ACCATTTCTCTGTCCATATC >RE_0819_translated MMHQMLNKKDSATHSTLPYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIIFQDQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSG SEITQRKGFASNPKQGSMTGFPNIHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAK LEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSVSDGADIF GHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHFSVHI |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1019/1020 (99.9%)(アミノ酸配列で339/340 (99.7%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G72 ATGATGCATCAGATGTTGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTTGGGGAGTGGTTCCAACTGATTCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 ATGATGCATCAGATGTTGAATAAGAAAGATTCAGCTACTCATTCCACTTTGCCATACCTTAATACTAGCATCTCTTGGGGAGTGGTTCCAACTGATTCCG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G72 TTGCTAATCGTCGCGGTTCTGCTGAATCACTAAGCTTGAAGGTTGATTCAAGACCTGGGCATATACAAACTACAAAGCAAATCAGTTTTCAGGACCAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: RE_081 TTGCTAATCGTCGCGGTTCTGCTGAATCACTAAGCTTGAAGGTTGATTCAAGACCTGGGCATATACAAACTACAAAGCAAATCATTTTTCAGGACCAAGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G72 TTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTAGTGGTGATGATAATCCTTCCAGACAAATCTCCTTTTCGGCTAAATCAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 TTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTAGTGGTGATGATAATCCTTCCAGACAAATCTCCTTTTCGGCTAAATCAGGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G72 TCTGAAATAACTCAACGGAAGGGGTTTGCAAGTAATCCTAAACAAGGCTCGATGACTGGATTTCCGAATATTCACTTTGCTCCTGCACAGGCTAATTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 TCTGAAATAACTCAACGGAAGGGGTTTGCAAGTAATCCTAAACAAGGCTCGATGACTGGATTTCCGAATATTCACTTTGCTCCTGCACAGGCTAATTTCT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G72 CATTTCACTATGCTGATCCACATTATGGTGGTTTATTAGCTGCAACTTACCTACCACAGGCACCAACATGCAATCCTCAAATGGTGAGTATGATTCCTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 CATTTCACTATGCTGATCCACATTATGGTGGTTTATTAGCTGCAACTTACCTACCACAGGCACCAACATGCAATCCTCAAATGGTGAGTATGATTCCTGG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G72 TCGTGTTCCTTTACCAGCAGAGCTCACAGAAACTGATCCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 TCGTGTTCCTTTACCAGCAGAGCTCACAGAAACTGATCCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAACGTGCTAAG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G72 CTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGCCCTATCTTCATGAGTCTCGACATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 CTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGCCCTATCTTCATGAGTCTCGACATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGAT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G72 TCCTAAACACCAAAAAACTTCTTCAAGAATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGTTAGGCCAACAGGTAAACAGAAAGACCAACAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 TCCTAAACACCAAAAAACTTCTTCAAGAATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGTTAGGCCAACAGGTAAACAGAAAGACCAACAT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G72 GTCTAGATTCGAAGCTCATATGCTGCAGAACAACAAAGACCGCAGCTCAACCACTTCTGGCTCAGACATCACCTCTGTTTCCGACGGTGCTGATATCTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 GTCTAGATTCGAAGCTCATATGCTGCAGAACAACAAAGACCGCAGCTCAACCACTTCTGGCTCAGACATCACCTCTGTTTCCGACGGTGCTGATATCTTT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G72 GGACACACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATAAACCGAGCCATGCTTGTTCATGGTCAGTCTAATGACATGCATGGAGGTGGAGACATGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 GGACACACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATAAACCGAGCCATGCTTGTTCATGGTCAGTCTAATGACATGCATGGAGGTGGAGACATGC 910 920 930 940 950 960 970 980 990 1000 1010 1020 AT1G72 ACCATTTCTCTGTCCATATC :::::::::::::::::::: RE_081 ACCATTTCTCTGTCCATATC 1010 1020 10 20 30 40 50 60 70 80 90 100 AT1G72 MMHQMLNKKDSATHSTLPYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQISFQDQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: RE_081 MMHQMLNKKDSATHSTLPYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIIFQDQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G72 SEITQRKGFASNPKQGSMTGFPNIHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 SEITQRKGFASNPKQGSMTGFPNIHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G72 LEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSVSDGADIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_081 LEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSVSDGADIF 210 220 230 240 250 260 270 280 290 300 310 320 330 340 AT1G72 GHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHFSVHI :::::::::::::::::::::::::::::::::::::::: RE_081 GHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHFSVHI 310 320 330 340 |