| Code name | RE_0835 | |||
|---|---|---|---|---|
| Locus | AT5G47670 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列87.60%一致 | |||
| comment | 0314_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0835_615bp ATGGCAGAGGGCAGTATGCGTCCTCCAGAATTCAACCAGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGTTCA TGCCTATTGCCAACGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGATCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGA GTACATCAGCTTCATAACAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACGTCTTGTGGGCAATGAGCAAGCTC GGTTTTGATGACTACATCGAACCCCTCACGTTGTACCTCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTAGTA TGACCAACGGCTTGGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCTACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCG TCATCAGAACGGGTTTGTTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCGCCAGAGTTGAAGTATTTCCGACT CAACAACATAAGTAC >RE_0835_translated MAEGSMRPPEFNQPNKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKL GFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVKRPNGTMTEYGAYGPVPGIHMAQYHYRHQNGFVFSGNEPNSKMSGSSSGASGARVEVFPT QQHKY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 615/702 (87.6%)（アミノ酸配列で205/234 (87.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G47 ATGGAACGTGGAGGCTTCCATGGCTACCGCAAGCTGTCCGTGAACAACACCACTCCTTCTCCACCAGGATTAGCAGCGAATTTTCTGATGGCAGAGGGCA
:::::::::::::
RE_083 ---------------------------------------------------------------------------------------ATGGCAGAGGGCA
10
110 120 130 140 150 160 170 180 190 200
AT5G47 GTATGCGTCCTCCAGAATTCAACCAGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGTTCATGCCTATTGCCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 GTATGCGTCCTCCAGAATTCAACCAGCCTAACAAAACCAGTAATGGTGGTGAGGAGGAGTGCACGGTGAGGGAGCAAGACAGGTTCATGCCTATTGCCAA
20 30 40 50 60 70 80 90 100 110
210 220 230 240 250 260 270 280 290 300
AT5G47 CGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGATCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGAGTACATCAGCTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 CGTGATACGGATCATGCGGAGGATCTTACCTGCTCACGCCAAGATCTCAGATGACTCCAAGGAGACGATCCAAGAGTGTGTTTCGGAGTACATCAGCTTC
120 130 140 150 160 170 180 190 200 210
310 320 330 340 350 360 370 380 390 400
AT5G47 ATAACAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACGTCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 ATAACAGGGGAGGCTAATGAGCGGTGCCAGCGGGAACAGCGCAAGACCATCACTGCTGAGGACGTCTTGTGGGCAATGAGCAAGCTCGGTTTTGATGACT
220 230 240 250 260 270 280 290 300 310
410 420 430 440 450 460 470 480 490 500
AT5G47 ACATCGAACCCCTCACGTTGTACCTCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTAGTATGACCAACGGCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 ACATCGAACCCCTCACGTTGTACCTCCACCGCTACAGAGAGTTGGAAGGTGAAAGAGGGGTTAGCTGCAGTGCTGGGTCCGTTAGTATGACCAACGGCTT
320 330 340 350 360 370 380 390 400 410
510 520 530 540 550 560 570 580 590 600
AT5G47 GGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCTACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 GGTGGTCAAGAGGCCTAATGGGACCATGACCGAGTATGGAGCCTACGGGCCTGTGCCAGGGATTCACATGGCGCAGTACCATTATCGTCATCAGAACGGG
420 430 440 450 460 470 480 490 500 510
610 620 630 640 650 660 670 680 690 700
AT5G47 TTTGTTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCGCCAGAGTTGAAGTATTTCCGACTCAACAACATAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 TTTGTTTTCAGTGGTAACGAACCTAATTCTAAGATGAGTGGTTCATCTTCAGGAGCAAGTGGCGCCAGAGTTGAAGTATTTCCGACTCAACAACATAAGT
520 530 540 550 560 570 580 590 600 610
AT5G47 AC
::
RE_083 AC
10 20 30 40 50 60 70 80 90 100
AT5G47 MERGGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 -----------------------------MAEGSMRPPEFNQPNKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISF
10 20 30 40 50 60 70
110 120 130 140 150 160 170 180 190 200
AT5G47 ITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVKRPNGTMTEYGAYGPVPGIHMAQYHYRHQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_083 ITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVKRPNGTMTEYGAYGPVPGIHMAQYHYRHQNG
80 90 100 110 120 130 140 150 160 170
210 220 230
AT5G47 FVFSGNEPNSKMSGSSSGASGARVEVFPTQQHKY
::::::::::::::::::::::::::::::::::
RE_083 FVFSGNEPNSKMSGSSSGASGARVEVFPTQQHKY
180 190 200
|
|||