| Code name | RE_0841 | |||
|---|---|---|---|---|
| Locus | AT1G14600 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列92.20%一致 | |||
| comment | 0424_アミノ酸配列70%以上一致, AT1G14600.2_by_RIKE読まれた配列に有N | |||
| sequence |
>RE_0841_765bp ATGGGTAGGTGTGGAAGAAGCAACGACGGATTAATTGGTGGAGTAAAACCATACGTACAATCTCCGGTGCCTCGTCTGAAATGGACGCCGGAGCTTCACC GGAGTTTCGTTCACGCCGTTAATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAAATAAGGGATGTCAAGGGACTAACCATATCACA CGTCAGGAGCCATCTCCGGATGTATAGGGGATCCAAAATCACTCTTCTGGGAAAACCAAAAAAGAGTTCTTCACCATCTTCAAAAAAAAAAAAAAAACAA GACAATGAAAAAAATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTAACTTTAGAGAGCAAACTTCAG CGACGGATAATGATGACAATAACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCCATCAAATTTCAGTCTCATCA CTCTCTCGAGGCTGAGAACACGAAGAACATTTGGAAAAACACATGGCGAGAAAACGAACACGAAGAAGAAGAAGAGTTATCGCTGTCTCTGTCGTTGAAT CATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAAACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCA GAGATTGTTTTGCTTCTTCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGC >RE_0841_translated MGRCGRSNDGLIGGVKPYVQSPVPRLKWTPELHRSFVHAVNLLGGQYKATPKLVLKIRDVKGLTISHVRSHLRMYRGSKITLLGKPKKSSSPSSKKKKKQ DNEKNHLHDNLSVHARNDCLLGFHSFNFREQTSATDNDDNNFLNIMNMERTKTFAGNGESIKFQSHHSLEAENTKNIWKNTWRENEHEEEEELSLSLSLN HPHNHQQRWKSNASSSLSETSEAVSSSSGPFIFRDCFASSKIDLNLNLSFSLLHS |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 741/765 (96.9%)（アミノ酸配列で235/255 (92.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G14 ATGGGTAGGTGTGGAAGAAGCAACGACGGAGTAATTGGTGGAGTAAGACCATACGTACGATCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACC
:::::::::::::::::::::::::::::: ::::::::::::::: ::::::::::: :::::::::::::::::::: ::::::::::::::::::::
RE_084 ATGGGTAGGTGTGGAAGAAGCAACGACGGATTAATTGGTGGAGTAAAACCATACGTACAATCTCCGGTGCCTCGTCTGAAATGGACGCCGGAGCTTCACC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G14 GGAGTTTCGTTCACGCCGTTGATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTCAAGGGACTAACCATATCACA
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: :::: :::::::::::::::::::::::::::
RE_084 GGAGTTTCGTTCACGCCGTTAATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAAATAAGGGATGTCAAGGGACTAACCATATCACA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G14 CGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGAATCACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTCAAGAAGAAGAAGAAGACAA
::::: ::::::::::: ::::::::::::::::: :::::::::::: ::::::::: :: ::::::::::::::::::::: :: :: :: :: ::::
RE_084 CGTCAGGAGCCATCTCCGGATGTATAGGGGATCCAAAATCACTCTTCTGGGAAAACCAAAAAAGAGTTCTTCACCATCTTCAAAAAAAAAAAAAAAACAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G14 GACAATGAAGAAGATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAG
::::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
RE_084 GACAATGAAAAAAATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTAACTTTAGAGAGCAAACTTCAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G14 CGACTGATAATGATGACGATGACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCCATCAAATTTCAGTCTCATCA
:::: :::::::::::: :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 CGACGGATAATGATGACAATAACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCCATCAAATTTCAGTCTCATCA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G14 CTCTCTCGAGGCTGAGAACACGAAGAACATTTGGAAAAACACATGGCGAGAAAACGAACACGAAGAAGAAGAAGAGTTATCGCTGTCTCTGTCGTTGAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 CTCTCTCGAGGCTGAGAACACGAAGAACATTTGGAAAAACACATGGCGAGAAAACGAACACGAAGAAGAAGAAGAGTTATCGCTGTCTCTGTCGTTGAAT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G14 CATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAAACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 CATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAAACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760
AT1G14 GAGATTGTTTTGCTTCTTCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 GAGATTGTTTTGCTTCTTCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGC
710 720 730 740 750 760
10 20 30 40 50 60 70 80 90 100
AT1G14 MGRCGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRRRRRQ
::::::::::.::::.:::.::::::.:::::::::::::.:::::::::::::::: ::::::::::.:::.:::::.:::::::..::::::.....:
RE_084 MGRCGRSNDGLIGGVKPYVQSPVPRLKWTPELHRSFVHAVNLLGGQYKATPKLVLKIRDVKGLTISHVRSHLRMYRGSKITLLGKPKKSSSPSSKKKKKQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G14 DNEEDHLHDNLSVHARNDCLLGFHSFNFREQTSATDNDDDDFLNIMNMERTKTFAGNGESIKFQSHHSLEAENTKNIWKNTWRENEHEEEEELSLSLSLN
:::..::::::::::::::::::::::::::::::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 DNEKNHLHDNLSVHARNDCLLGFHSFNFREQTSATDNDDNNFLNIMNMERTKTFAGNGESIKFQSHHSLEAENTKNIWKNTWRENEHEEEEELSLSLSLN
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT1G14 HPHNHQQRWKSNASSSLSETSEAVSSSSGPFIFRDCFASSKIDLNLNLSFSLLHS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 HPHNHQQRWKSNASSSLSETSEAVSSSSGPFIFRDCFASSKIDLNLNLSFSLLHS
210 220 230 240 250
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