| Code name | RE_0846 | |||
|---|---|---|---|---|
| Locus | AT1G68670 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列88.40%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0846_1059bp ATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGAATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCG AGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACCACTACATCAGAACAGTGTTCAGAACA GACCACAAGTGTTTGTGGTGGTCCTGTCTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTGAAGAAGTACAAGAAGAAGAAGAAGATGAT GAAGATGATTCTTCTCCTCAACATGTGGAGAATAAGAAAACATATTGGCGTATATCAGTTCATCTATTGAAGCATTCATCGGAGCATCTTCCTCCAGAGG AGGATGTAGCTGATAAAACGAAGGTGGTGGAGGAGGTAACACAAAGCGGTGCGGTGCATCCGTCTCTTCAGCGCGTTGTGGAGAATGATGAGCTACCACC GGTGATAATAGCTGCTTCGATGACGCCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTAAAAGTGATTTGATTAAAGCTGGAGATGAGGAAAGA CGGATAGAGCAGCAGCAATCGCAGTCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAACGCGCTTCAGCAGC TTGGAGGATCTCATGTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAAATATAG ACTTCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACAACCACAATTTGTGGTGGTTGGAGGCATATGGGTACCA TCGTCACAAGATTTTCCACCACCGTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAAACGTTCGTTGGAGAGAA GTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATACTTCTACTCCTGTGTCA >RE_0846_translated MMVEMDYAKKMQKCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEDD EDDSSPQHVENKKTYWRISVHLLKHSSEHLPPEEDVADKTKVVEEVTQSGAVHPSLQRVVENDELPPVIIAASMTPTTTSSTTETCGGKSDLIKAGDEER RIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWVP SSQDFPPPSDVANKGGVYAPVAVAQSPKRSLERSCNSPAASSSTNTNTSTPVS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1003/1065 (94.2%)（アミノ酸配列で313/354 (88.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G68 ATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGAATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 ATGATGGTGGAGATGGATTACGCTAAGAAAATGCAGAAATGTCATGAATACGTTGAAGCACTTGAAGAAGAACAGAAGAAAATCCAAGTCTTTCAACGCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G68 AGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACAACTACATCAGAACAGTGTTCAGAACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
RE_084 AGCTTCCTTTATGTTTAGAGCTTGTCACTCAAGCGATCGAAGCTTGTCGGAAGGAGTTATCTGGTACGACGACCACTACATCAGAACAGTGTTCAGAACA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G68 GACCACAAGTGTTTGTGGTGGTCCTGTCTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTGAAGAAGTACAAGAAGAAGAAGAAGAAGAT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
RE_084 GACCACAAGTGTTTGTGGTGGTCCTGTCTTTGAAGAGTTTATTCCTATCAAGAAAATTAGTTCCTTGTGTGAAGAAGTAC---AAGAAGAAGAAGAAGAT
210 220 230 240 250 260 270 280 290
310 320 330 340 350 360 370 380 390
AT1G68 GGTGAACATGAATCTTCTCCAGAACTTGTGAATAATAAGAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAATCATTCACCGG---ATCTAAATCCAA
: :::: :::: :::::::: ::: :::: : ::::::::: :: :::::: :: ::: ::::: :::: ::: :::::: ::: :::: :::
RE_084 GATGAAGATGATTCTTCTCCTCAACATGTGGAGAATAAGAAAACATATTGGCGTATATCAGTTCATCTATTGAAGCATTCATCGGAGCATCT---TCCTC
300 310 320 330 340 350 360 370 380 390
400 410 420 430 440 450 460 470 480 490
AT1G68 AAGAGGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGTGCGTTTCAGCCGTTTCAAAAGCGCGTTTTGGAGACTGATTTGCA
::::::: ::::::: : ::: :::: :::::::::: : : :: ::::::::::: : :: :::: :: :::::::: :::::: :::: ::
RE_084 CAGAGGAGGATGTAGCTGATAAAACGAAGGTGGTGGAGGAGGTAACACAAAGCGGTGCGGTGCATCCGTCTCTTCAGCGCGTTGTGGAGAATGATGAGCT
400 410 420 430 440 450 460 470 480 490
500 510 520 530 540 550 560 570 580 590
AT1G68 ACCGGCGGTGAAAGTAGCTAGTTCGATGCCAGCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTAAAAGTGATTTGATTAAAGCTGGAGATGAG
::: :::::: : ::::: ::::::: : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 ACCACCGGTGATAATAGCTGCTTCGATGACGCCGACGACGACGAGTTCTACGACGGAAACTTGTGGTGGTAAAAGTGATTTGATTAAAGCTGGAGATGAG
500 510 520 530 540 550 560 570 580 590
600 610 620 630 640 650 660 670 680 690
AT1G68 GAAAGACGGATAGAGCAGCAGCAATCGCAGTCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAACGCGCTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 GAAAGACGGATAGAGCAGCAGCAATCGCAGTCGCATACGCATAGAAAACAAAGGCGGTGCTGGTCGCCGGAATTACACCGTCGATTCCTAAACGCGCTTC
600 610 620 630 640 650 660 670 680 690
700 710 720 730 740 750 760 770 780 790
AT1G68 AGCAGCTTGGAGGATCTCATGTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 AGCAGCTTGGAGGATCTCATGTTGCTACACCAAAGCAAATCAGGGATCACATGAAGGTTGATGGATTAACAAACGACGAAGTTAAAAGCCATTTACAGAA
700 710 720 730 740 750 760 770 780 790
800 810 820 830 840 850 860 870 880 890
AT1G68 ATATAGACTTCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACAACCACAATTTGTGGTGGTTGGAGGCATATGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 ATATAGACTTCACACAAGAAGGCCAGCAGCAACATCCGTGGCGGCACAAAGTACCGGGAATCAGCAACAACCACAATTTGTGGTGGTTGGAGGCATATGG
800 810 820 830 840 850 860 870 880 890
900 910 920 930 940 950 960 970 980 990
AT1G68 GTACCATCGTCACAAGATTTTCCACCACCGTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAAACGTTCGTTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 GTACCATCGTCACAAGATTTTCCACCACCGTCCGATGTAGCCAACAAGGGTGGTGTATATGCTCCGGTTGCGGTGGCGCAATCTCCAAAACGTTCGTTGG
900 910 920 930 940 950 960 970 980 990
1000 1010 1020 1030 1040 1050 1060
AT1G68 AGAGAAGTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATACTTCTACTCCTGTGTCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 AGAGAAGTTGCAACTCGCCGGCGGCATCTTCCTCTACAAATACAAATACTTCTACTCCTGTGTCA
1000 1010 1020 1030 1040 1050
10 20 30 40 50 60 70 80 90 100
AT1G68 MMVEMDYAKKMQKCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
RE_084 MMVEMDYAKKMQKCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEDD
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G68 GEHESSPELVNNKKSDWLRSVQLWNHSPDLNPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAVKVASSMPATTTSSTTETCGGKSDLIKAGDEE
: .:::. : :::. : :: : :: . : :: :: : :::: .::: : .::.: : : : .:.:: :::::::::::::::::::::::
RE_084 -EDDSSPQHVENKKTYWRISVHLLKHSSEHLPPEEDVADKTKVVEEVTQSGAVHPSLQRVVENDELPPVIIAASMTPTTTSSTTETCGGKSDLIKAGDEE
110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280 290 300
AT1G68 RRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 RRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWV
200 210 220 230 240 250 260 270 280 290
310 320 330 340 350
AT1G68 PSSQDFPPPSDVANKGGVYAPVAVAQSPKRSLERSCNSPAASSSTNTNTSTPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_084 PSSQDFPPPSDVANKGGVYAPVAVAQSPKRSLERSCNSPAASSSTNTNTSTPVS
300 310 320 330 340 350
|
|||