| Code name | RE_0857 | |||
|---|---|---|---|---|
| Locus | AT2G42660 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致, AT2G42660.2_by_RIKE読まれた配列に有N | |||
| sequence |
>RE_0857_765bp ATGGCCGGGAGATCTTCGCCGGGAAAATGCTCCACGTGGCTTGACCTGAACAGAGAAGAAACAGTGGAGAAGAACAATGAAGAAGAGTCATCAGTGGAAG ACGAAGACCAAATCACGAATAACGTTAGACAGTATATTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGATCTTCATCTCTCCTTCGTTCGTGCTGT CCAACGACTAGGCGGTCCAGACAGAGCGACGCCGAAATTGGTTCTTGAGATGATGAATCTAAAAGGATTGAGTATTGCACATGTCAAGAGTCATTTACAG ATGTATCGAAGTAAGAAGCTCGAGCCGTCTTCTCGCCCTGGATTTGGAGCTTTCATGAGTGGACAAAGAAGCTATTTGATGGACATGATCGACTCTCGAT GTATCCTTCATAGCGATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCGGTCGTTACAAATCTTGGAGGTAACTT TCTTATGCGACCTTCGAGCTGGTTTAGCGGGTTATGCAGAAATGACCGAGACAGCACAGAGAACAAGACTCTGCCTCTACTCGAGATTAGGAAGAAGAAC AATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCAATGTCCGGAGGTGGGATACAGTTGCCTGAGTTTGGAAATTGCAGGC AAAAACCAACAGATGATATCAACACAATGCTCTCGCTCTCTCTGTTGTCGACATCATCAGAACCG >RE_0857_translated MAGRSSPGKCSTWLDLNREETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ MYRSKKLEPSSRPGFGAFMSGQRSYLMDMIDSRCILHSDLRHAYNSKTVPSRVLNQDAVVTNLGGNFLMRPSSWFSGLCRNDRDSTENKTLPLLEIRKKN NEKRVRDEEVSSVKRLKSMSGGGIQLPEFGNCRQKPTDDINTMLSLSLLSTSSEP |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 764/765 (99.9%)（アミノ酸配列で254/255 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G42 ATGGCCGGGAGATCTTCGCCGGGAAAATGCTCCACGTGGCTTGACCTGAACAGAGAAGAAACAGTGGAGAAGAACAATGAAGAAGAGTCATCAGTGGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 ATGGCCGGGAGATCTTCGCCGGGAAAATGCTCCACGTGGCTTGACCTGAACAGAGAAGAAACAGTGGAGAAGAACAATGAAGAAGAGTCATCAGTGGAAG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G42 ACGAAGACCAAATCACGAATAACGTTAGACAGTATATTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGATCTTCATCTCTCCTTCGTTCGTGCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 ACGAAGACCAAATCACGAATAACGTTAGACAGTATATTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGATCTTCATCTCTCCTTCGTTCGTGCTGT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G42 CCAACGACTAGGCGGTCCAGACAGAGCGACGCCGAAATTGGTTCTTGAGATGATGAATCTAAAAGGATTGAGTATTGCACATGTCAAGAGTCATTTACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 CCAACGACTAGGCGGTCCAGACAGAGCGACGCCGAAATTGGTTCTTGAGATGATGAATCTAAAAGGATTGAGTATTGCACATGTCAAGAGTCATTTACAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G42 ATGTATCGAAGTAAGAAGCTCGAGCCGTCTTCTCGCCCTGGATTTGGAGCTTTCATGAGTGGACAAAGAAGCTATTTGATGGACATGATCGACTCTCGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 ATGTATCGAAGTAAGAAGCTCGAGCCGTCTTCTCGCCCTGGATTTGGAGCTTTCATGAGTGGACAAAGAAGCTATTTGATGGACATGATCGACTCTCGAT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G42 GTATCCCTCATAGCGATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCGGTCGTTACAAATCTTGGAGGTAACTT
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 GTATCCTTCATAGCGATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCGGTCGTTACAAATCTTGGAGGTAACTT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT2G42 TCTTATGCGACCTTCGAGCTGGTTTAGCGGGTTATGCAGAAATGACCGAGACAGCACAGAGAACAAGACTCTGCCTCTACTCGAGATTAGGAAGAAGAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 TCTTATGCGACCTTCGAGCTGGTTTAGCGGGTTATGCAGAAATGACCGAGACAGCACAGAGAACAAGACTCTGCCTCTACTCGAGATTAGGAAGAAGAAC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT2G42 AATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCAATGTCCGGAGGTGGGATACAGTTGCCTGAGTTTGGAAATTGCAGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 AATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCAATGTCCGGAGGTGGGATACAGTTGCCTGAGTTTGGAAATTGCAGGC
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760
AT2G42 AAAAACCAACAGATGATATCAACACAATGCTCTCGCTCTCTCTGTTGTCGACATCATCAGAACCG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 AAAAACCAACAGATGATATCAACACAATGCTCTCGCTCTCTCTGTTGTCGACATCATCAGAACCG
710 720 730 740 750 760
10 20 30 40 50 60 70 80 90 100
AT2G42 MAGRSSPGKCSTWLDLNREETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 MAGRSSPGKCSTWLDLNREETVEKNNEEESSVEDEDQITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G42 MYRSKKLEPSSRPGFGAFMSGQRSYLMDMIDSRCIPHSDLRHAYNSKTVPSRVLNQDAVVTNLGGNFLMRPSSWFSGLCRNDRDSTENKTLPLLEIRKKN
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 MYRSKKLEPSSRPGFGAFMSGQRSYLMDMIDSRCILHSDLRHAYNSKTVPSRVLNQDAVVTNLGGNFLMRPSSWFSGLCRNDRDSTENKTLPLLEIRKKN
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT2G42 NEKRVRDEEVSSVKRLKSMSGGGIQLPEFGNCRQKPTDDINTMLSLSLLSTSSEP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_085 NEKRVRDEEVSSVKRLKSMSGGGIQLPEFGNCRQKPTDDINTMLSLSLLSTSSEP
210 220 230 240 250
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