◆◆◆RE_0859 detail◆◆◆

Code name	RE_0859
Locus	AT3G04450
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列91.00%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0859_1206bp ATGAATAACAACCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGTGGTAGTTCTGGTGGGAATTTGTTTTCATCTTCTTCCGGATTCTGCAATGGTG TCTATGTTTCATCTTCCTCCCAGGCACGGCCATCTGTTTCTACCGTGCCAAGAGACAGAATTACTGTTGCTCACGTCTCTGGTGAAGGGCAGAGGCAGGA ATGCCCTGTGGAAACACATTCCTTGCAATTGATCAATCAACCTCAAGAACAGAAAATTATGACTTGGTCTTCAGACCAGATTCGGGGCTTCTTCGATTTT CCTGTTCCAGATCCACAAGCAGCGAGCAGCAGAACTATGGTTTCATCCAAGGAAGTGCTTTCAAAATGCGAATGGCCAGACTGGGCGGATCAGTTGATCT CTGATGATAGTCTTGAACCAAATTGGTCGGAGCTTCTAGGTGATCCTAATGTACTCAATCTATATTCAAAGATAGAAACACAGTCTTCTGATATAGCAAG GCAAGAGATCGTCTTTAGAAATCAGCATCAGGTGGATCCATCAATGGAGCCGTTTAATGCCAAAAGCCCACCAGCTAGTTCAATGACATCTAAGCAAAGA ATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCGATCAATCAGCTCGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATCA ATAGCCCTGGGTTGACCGTTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACTGCAAGGTATAAACCAGAGCTTTCCAAAGATACAGAAGAACCTCT AGTAAAGAATTTGAAAACCATTGAAGATATCAAATCTCTTGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTCCGGTTACAGATGAAAGTTCAAAAA CAACTCCACGAGCAACTTGAGATCCAAAGATCACTGCAGTTACAAATCGAAGAACAAGGTCGGTATCTTCAGATGATGATTGAGAAACAACAGAAGATGC AAGAGAACAAAAAAGACTCTACTTCCTCATCATCAATGCCAGAAGCTGACCCTTCAGCTCCATCACCAAACCTTTCACAACCTTTCCTCCATAAAGCAAC CAATTCAGAACCATCAATAACTCAGAAACTGCAGAATGGTTCTAGCACAATGGATCAAAGTGAATCTACTTCTGGGACTAGTAATAGAAAACGGGTTAGA GAAGAT >RE_0859_translated MNNNPVPCQVFPLVSGGSSGGNLFSSSSGFCNGVYVSSSSQARPSVSTVPRDRITVAHVSGEGQRQECPVETHSLQLINQPQEQKIMTWSSDQIRGFFDF PVPDPQAASSRTMVSSKEVLSKCEWPDWADQLISDDSLEPNWSELLGDPNVLNLYSKIETQSSDIARQEIVFRNQHQVDPSMEPFNAKSPPASSMTSKQR MRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKPELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQK QLHEQLEIQRSLQLQIEEQGRYLQMMIEKQQKMQENKKDSTSSSSMPEADPSAPSPNLSQPFLHKATNSEPSITQKLQNGSSTMDQSESTSGTSNRKRVR ED
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1205/1326 (90.9%)（アミノ酸配列で402/442 (91.0%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G04 ATGACACTTGCTAGCGATTTTGGTTTTCCATCCGCTATATCTTCATCTTTTACAATTCTAGAAGAGAGATACCACAATAACTTTCCTAACACTTTGTGTG RE_085 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT3G04 TTTCATCAGGACAGGAATCGATGAATAACAACCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGTGGTAGTTCTGGTGGGAATTTGTTTTCATCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 --------------------ATGAATAACAACCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGTGGTAGTTCTGGTGGGAATTTGTTTTCATCTTC 10 20 30 40 50 60 70 80 210 220 230 240 250 260 270 280 290 300 AT3G04 TTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTCCCAGGCACGGCCATCTGTTTCTACCGTGCCAAGAGACAGAATTACTGTTGCTCACGTCTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 TTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTCCCAGGCACGGCCATCTGTTTCTACCGTGCCAAGAGACAGAATTACTGTTGCTCACGTCTCT 90 100 110 120 130 140 150 160 170 180 310 320 330 340 350 360 370 380 390 400 AT3G04 GGTGAAGGGCAGAGGCAGGAATGCCCTGTGGAAACACATTCCTTGCAATTGATCAATCAACCTCAAGAACAGAAAATTATGACTTGGTCTTCAGACCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 GGTGAAGGGCAGAGGCAGGAATGCCCTGTGGAAACACATTCCTTGCAATTGATCAATCAACCTCAAGAACAGAAAATTATGACTTGGTCTTCAGACCAGA 190 200 210 220 230 240 250 260 270 280 410 420 430 440 450 460 470 480 490 500 AT3G04 TTCGGGGCTTCTTCGATTTTCCTGTTCCAGATCCACAAGCAGCGAGCAGCAGAACTATGGTTTCATCCAAGGAAGTGCTTTCAAAATGCGAATGGCCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 TTCGGGGCTTCTTCGATTTTCCTGTTCCAGATCCACAAGCAGCGAGCAGCAGAACTATGGTTTCATCCAAGGAAGTGCTTTCAAAATGCGAATGGCCAGA 290 300 310 320 330 340 350 360 370 380 510 520 530 540 550 560 570 580 590 600 AT3G04 CTGGGCGGATCAGTTGATCTCTGATGATAGTCTTGAACCAAATTGGTCGGAGCTTCTAGGTGATCCTAATGTACTCAATCTATATTCAAAGATAGAAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 CTGGGCGGATCAGTTGATCTCTGATGATAGTCTTGAACCAAATTGGTCGGAGCTTCTAGGTGATCCTAATGTACTCAATCTATATTCAAAGATAGAAACA 390 400 410 420 430 440 450 460 470 480 610 620 630 640 650 660 670 680 690 700 AT3G04 CAGTCTTCTGATATAGCAAGGCAAGAGATCGTCTTTAGAAATCAGCATCAGGTGGATCCATCAATGGAGCCGTTTAATGCCAAAAGCCCACCAGCTAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 CAGTCTTCTGATATAGCAAGGCAAGAGATCGTCTTTAGAAATCAGCATCAGGTGGATCCATCAATGGAGCCGTTTAATGCCAAAAGCCCACCAGCTAGTT 490 500 510 520 530 540 550 560 570 580 710 720 730 740 750 760 770 780 790 800 AT3G04 CAATGACATCTAAGCAAAGAATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCTATCAATCAGCTCGGTGGTAGTGAACGAGCCACCCCTAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: RE_085 CAATGACATCTAAGCAAAGAATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCGATCAATCAGCTCGGTGGTAGTGAACGAGCCACCCCTAA 590 600 610 620 630 640 650 660 670 680 810 820 830 840 850 860 870 880 890 900 AT3G04 GGCTGTTTTGAAGCTCATCAATAGCCCTGGGTTGACCGTTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACTGCAAGGTATAAACCAGAGCTTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 GGCTGTTTTGAAGCTCATCAATAGCCCTGGGTTGACCGTTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACTGCAAGGTATAAACCAGAGCTTTCC 690 700 710 720 730 740 750 760 770 780 910 920 930 940 950 960 970 980 990 1000 AT3G04 AAAGATACAGAAGAACCTCTAGTAAAGAATTTGAAAACCATTGAAGATATCAAATCTCTTGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTCCGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 AAAGATACAGAAGAACCTCTAGTAAAGAATTTGAAAACCATTGAAGATATCAAATCTCTTGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTCCGGT 790 800 810 820 830 840 850 860 870 880 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G04 TACAGATGAAAGTTCAAAAACAACTCCACGAGCAACTTGAGATCCAAAGATCACTGCAGTTACAAATCGAAGAACAAGGTCGGTATCTTCAGATGATGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 TACAGATGAAAGTTCAAAAACAACTCCACGAGCAACTTGAGATCCAAAGATCACTGCAGTTACAAATCGAAGAACAAGGTCGGTATCTTCAGATGATGAT 890 900 910 920 930 940 950 960 970 980 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G04 TGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGACTCTACTTCCTCATCATCAATGCCAGAAGCTGACCCTTCAGCTCCATCACCAAACCTTTCACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 TGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGACTCTACTTCCTCATCATCAATGCCAGAAGCTGACCCTTCAGCTCCATCACCAAACCTTTCACAA 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G04 CCTTTCCTCCATAAAGCAACCAATTCAGAACCATCAATAACTCAGAAACTGCAGAATGGTTCTAGCACAATGGATCAAAGTGAATCTACTTCTGGGACTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 CCTTTCCTCCATAAAGCAACCAATTCAGAACCATCAATAACTCAGAAACTGCAGAATGGTTCTAGCACAATGGATCAAAGTGAATCTACTTCTGGGACTA 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1310 1320 AT3G04 GTAATAGAAAACGGGTTAGAGAAGAT :::::::::::::::::::::::::: RE_085 GTAATAGAAAACGGGTTAGAGAAGAT 1190 1200 10 20 30 40 50 60 70 80 90 100 AT3G04 MTLASDFGFPSAISSSFTILEERYHNNFPNTLCVSSGQESMNNNPVPCQVFPLVSGGSSGGNLFSSSSGFCNGVYVSSSSQARPSVSTVPRDRITVAHVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 ----------------------------------------MNNNPVPCQVFPLVSGGSSGGNLFSSSSGFCNGVYVSSSSQARPSVSTVPRDRITVAHVS 10 20 30 40 50 60 110 120 130 140 150 160 170 180 190 200 AT3G04 GEGQRQECPVETHSLQLINQPQEQKIMTWSSDQIRGFFDFPVPDPQAASSRTMVSSKEVLSKCEWPDWADQLISDDSLEPNWSELLGDPNVLNLYSKIET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 GEGQRQECPVETHSLQLINQPQEQKIMTWSSDQIRGFFDFPVPDPQAASSRTMVSSKEVLSKCEWPDWADQLISDDSLEPNWSELLGDPNVLNLYSKIET 70 80 90 100 110 120 130 140 150 160 210 220 230 240 250 260 270 280 290 300 AT3G04 QSSDIARQEIVFRNQHQVDPSMEPFNAKSPPASSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKPELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 QSSDIARQEIVFRNQHQVDPSMEPFNAKSPPASSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYKPELS 170 180 190 200 210 220 230 240 250 260 310 320 330 340 350 360 370 380 390 400 AT3G04 KDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQLEIQRSLQLQIEEQGRYLQMMIEKQQKMQENKKDSTSSSSMPEADPSAPSPNLSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_085 KDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQLEIQRSLQLQIEEQGRYLQMMIEKQQKMQENKKDSTSSSSMPEADPSAPSPNLSQ 270 280 290 300 310 320 330 340 350 360 410 420 430 440 AT3G04 PFLHKATNSEPSITQKLQNGSSTMDQSESTSGTSNRKRVRED :::::::::::::::::::::::::::::::::::::::::: RE_085 PFLHKATNSEPSITQKLQNGSSTMDQSESTSGTSNRKRVRED 370 380 390 400

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