| Code name | RE_0861 | |||
|---|---|---|---|---|
| Locus | AT3G12730 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0314_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0861_705bp ATGATGCAGTCGAGAGAGGAGATGAGAGATGATTCATCATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACAGAGCTTCACG AACGCTTCGTTGACGCCGTCACTCACCTTGGAGGCCCTGAAAAGGCTACACCAAAGACAATAATGAGAGTTATGGGTGTGAAGGGTCTCACTCTTTATCA TCTCAAGAGCCATCTCCAGAAGTTCAGACTTGGGAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTTGTATTAGAGATACAAATAGAGCTTCC ATGTTGGATCTTCGAAGGAATGCTGTTTTCACGACTAGTCCGCTCATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAGAGG AAGAGGTAGTAATAGAAAGACAGGTGAATCAAAGGATAGCGGCACAAGGGAAATACATGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAG CCTCACTAAAGACTACTCTACTCTATTTTTCGACCGCACCAATATTTGTAACAACACATCGTCCATCCCAATCCCATGGTTCGAGGATCATTTTCCTTCC TCTTCCTCCATGGACTCTACGTTGATTCTCCCCGACATCAATTCCAACTTCTCCCTACAAGATTCTAGGAGTTCCATCACTAAGGGCCGTACGGTTTGTC TCGGT >RE_0861_translated MMQSREEMRDDSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEHSQNHSICIRDTNRAS MLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACETQEASLTKDYSTLFFDRTNICNNTSSIPIPWFEDHFPS SSSMDSTLILPDINSNFSLQDSRSSITKGRTVCLG |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 704/705 (99.9%)（アミノ酸配列で234/235 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G12 ATGATGCAGTCGAGAGAGGAGATCAGAGATGATTCATCATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACAGAGCTTCACG
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 ATGATGCAGTCGAGAGAGGAGATGAGAGATGATTCATCATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACAGAGCTTCACG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G12 AACGCTTCGTTGACGCCGTCACTCACCTTGGAGGCCCTGAAAAGGCTACACCAAAGACAATAATGAGAGTTATGGGTGTGAAGGGTCTCACTCTTTATCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 AACGCTTCGTTGACGCCGTCACTCACCTTGGAGGCCCTGAAAAGGCTACACCAAAGACAATAATGAGAGTTATGGGTGTGAAGGGTCTCACTCTTTATCA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G12 TCTCAAGAGCCATCTCCAGAAGTTCAGACTTGGGAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTTGTATTAGAGATACAAATAGAGCTTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 TCTCAAGAGCCATCTCCAGAAGTTCAGACTTGGGAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTTGTATTAGAGATACAAATAGAGCTTCC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G12 ATGTTGGATCTTCGAAGGAATGCTGTTTTCACGACTAGTCCGCTCATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 ATGTTGGATCTTCGAAGGAATGCTGTTTTCACGACTAGTCCGCTCATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAGAGG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G12 AAGAGGTAGTAATAGAAAGACAGGTGAATCAAAGGATAGCGGCACAAGGGAAATACATGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 AAGAGGTAGTAATAGAAAGACAGGTGAATCAAAGGATAGCGGCACAAGGGAAATACATGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G12 CCTCACTAAAGACTACTCTACTCTATTTTTCGACCGCACCAATATTTGTAACAACACATCGTCCATCCCAATCCCATGGTTCGAGGATCATTTTCCTTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 CCTCACTAAAGACTACTCTACTCTATTTTTCGACCGCACCAATATTTGTAACAACACATCGTCCATCCCAATCCCATGGTTCGAGGATCATTTTCCTTCC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G12 TCTTCCTCCATGGACTCTACGTTGATTCTCCCCGACATCAATTCCAACTTCTCCCTACAAGATTCTAGGAGTTCCATCACTAAGGGCCGTACGGTTTGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 TCTTCCTCCATGGACTCTACGTTGATTCTCCCCGACATCAATTCCAACTTCTCCCTACAAGATTCTAGGAGTTCCATCACTAAGGGCCGTACGGTTTGTC
610 620 630 640 650 660 670 680 690 700
AT3G12 TCGGT
:::::
RE_086 TCGGT
10 20 30 40 50 60 70 80 90 100
AT3G12 MMQSREEIRDDSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEHSQNHSICIRDTNRAS
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 MMQSREEMRDDSSSGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEHSQNHSICIRDTNRAS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G12 MLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACETQEASLTKDYSTLFFDRTNICNNTSSIPIPWFEDHFPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_086 MLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACETQEASLTKDYSTLFFDRTNICNNTSSIPIPWFEDHFPS
110 120 130 140 150 160 170 180 190 200
210 220 230
AT3G12 SSSMDSTLILPDINSNFSLQDSRSSITKGRTVCLG
:::::::::::::::::::::::::::::::::::
RE_086 SSSMDSTLILPDINSNFSLQDSRSSITKGRTVCLG
210 220 230
|
|||