◆◆◆RE_0869 detail◆◆◆

Code name	RE_0869
Locus	AT4G16110
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列92.60%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0869_1929bp ATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGGTACTGCTGCTGGTGGGTCAAACTCCGGCCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGTTG ATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAGAGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCT TCGGAAGAACAAGAATGGTTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGAACACGTTGGTTTAGAGATGGAT TTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAGCGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTATTG AGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGTTTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGA CAGGGACAGGCAGCAGCAGCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTCGAGGAAGCGGAAGGAAGAGGAA GTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAGTTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGTGA ATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACCCGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTA TCGGATATATCTGAGACGGCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGATCAGAGTTTTGGACCTCTTTCT TCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTACTGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTACAC TCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTTTGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTCAGAC GATGAACAATGGAAATTTGCTTCATGGTGTCCCAACGGGTAGTCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTA GCAGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATTGTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTG CGCTGGCGGTTAGAAACAGTATCCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGCCTTCAATAACTTCCCCGCGGATCTACCTCGCAGCAG CTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATCAGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCT ACTGCTGGATTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCACCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATC TGCGGAATATGGGATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCACTTCGGAAGCATACTCTTCGTCTTCTAC GCAGAGAAAAAGACGTGAAACGGACGCAACAGTTGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCACGTTTTT ATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGACTTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAG ATCTGATGAGCGCATTTCTCAAACAGGTT >RE_0869_translated MVNPGHGRGPDSGTAAGGSNSGPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMD LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEE VDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLS SLNGFDLQSLAVTGQLPPQSLAQLQAAGLGRPTLAKPGMSVSPLVDQRSIFNFENPKIRFGDGHGQTMNNGNLLHGVPTGSHMRLRPGQNVQSSGMMLPV ADQLPRGGPSMLPSLGQQPILSSSVSRRSDLTGALAVRNSIPETNSRVLPTTHSAFNNFPADLPRSSFPLASAPGISVPVSVSYQEEVNSSDAKGGSSAA TAGFGNPSYDIFNDFPQHQQHNKNISNKLNDWDLRNMGLVFSSNQDAATATATAAFSTSEAYSSSSTQRKRRETDATVVGEHGQNLQSPSRNLYHLNHVF MDGGSVRVKSERVAETVTCPPANTLFHEQYNQEDLMSAFLKQV
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1924/1992 (96.6%)（アミノ酸配列で640/664 (96.4%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G16 ATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGGTACTGCTGCTGGTGGGTCAAACTCCGACCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: RE_086 ATGGTAAATCCGGGTCACGGAAGAGGACCCGATTCGGGTACTGCTGCTGGTGGGTCAAACTCCGGCCCGTTTCCTGCGAATCTTCGAGTTCTTGTCGTTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G16 ATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAGAGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 ATGATGATCCAACTTGTCTCATGATCTTAGAGAGGATGCTTATGACTTGTCTCTACAGAGTAACTAAATGTAACAGAGCAGAGAGCGCATTGTCTCTGCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G16 TCGGAAGAACAAGAATGGTTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGAACACGTTGGTTTAGAGATGGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TCGGAAGAACAAGAATGGTTTTGATATTGTCATTAGTGATGTTCATATGCCTGACATGGATGGTTTCAAGCTCCTTGAACACGTTGGTTTAGAGATGGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G16 TTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAGCGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTATTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TTACCTGTTATCATGATGTCTGCGGATGATTCGAAGAGCGTTGTGTTGAAAGGAGTGACTCACGGTGCAGTTGATTACCTCATCAAACCGGTACGTATTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G16 AGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGTTTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 AGGCTTTGAAGAATATATGGCAACATGTGGTGCGGAAGAAGCGTAACGAGTGGAATGTTTCTGAACATTCTGGAGGAAGTATTGAAGATACTGGCGGTGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G16 CAGGGACAGGCAGCAGCAGCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTCGAGGAAGCGGAAGGAAGAGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 CAGGGACAGGCAGCAGCAGCATAGGGAGGATGCTGATAACAACTCGTCTTCAGTTAATGAAGGGAACGGGAGGAGCTCGAGGAAGCGGAAGGAAGAGGAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G16 GTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAGTTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 GTAGATGATCAAGGGGATGATAAGGAAGACTCATCGAGTTTAAAGAAACCACGCGTGGTTTGGTCTGTTGAATTGCATCAGCAGTTTGTTGCTGCTGTGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G16 ATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACCCGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 ATCAGCTAGGCGTTGACAAAGCTGTTCCTAAGAAGATCTTAGAGATGATGAATGTACCCGGGCTAACGCGAGAAAACGTAGCCAGTCACCTCCAGAAGTA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G16 TCGGATATATCTGAGACGGCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGATCAGAGTTTTGGACCTCTTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TCGGATATATCTGAGACGGCTTGGAGGAGTATCGCAACACCAAGGAAATATGAACCATTCGTTTATGACTGGTCAAGATCAGAGTTTTGGACCTCTTTCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G16 TCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTACTGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TCGTTGAATGGATTTGATCTTCAATCTTTAGCTGTTACTGGTCAGCTCCCTCCTCAGAGCCTTGCACAGCTTCAAGCAGCTGGTCTTGGCCGGCCTACAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G16 TCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTTTGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTCAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TCGCTAAACCAGGGATGTCGGTTTCTCCCCTTGTAGATCAGAGAAGCATCTTCAACTTTGAAAACCCAAAAATAAGATTTGGAGACGGACATGGTCAGAC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G16 GATGAACAATGGAAATTTGCTTCATGGTGTCCCAACGGGTAGTCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 GATGAACAATGGAAATTTGCTTCATGGTGTCCCAACGGGTAGTCACATGCGTCTGCGTCCTGGACAGAATGTTCAGAGCAGCGGAATGATGTTGCCAGTA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G16 GCAGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATTGTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 GCAGACCAGCTACCTCGAGGAGGACCATCGATGCTACCATCCCTCGGGCAACAGCCGATATTGTCAAGCAGCGTTTCAAGAAGAAGCGATCTCACTGGTG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G16 CGCTGGCGGTTAGAAACAGTATCCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGTCTTCAATAACTTCCCCGCGGATCTACCTCGCAGCAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: RE_086 CGCTGGCGGTTAGAAACAGTATCCCCGAGACCAACAGCAGAGTGTTACCAACTACTCACTCGGCCTTCAATAACTTCCCCGCGGATCTACCTCGCAGCAG 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G16 CTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATCAGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 CTTCCCGTTGGCAAGTGCCCCAGGGATTTCAGTTCCAGTATCAGTTTCTTACCAAGAAGAGGTCAACAGCTCGGATGCAAAAGGAGGTTCATCAGCTGCT 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G16 ACTGCTGGATTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCACCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 ACTGCTGGATTTGGTAACCCAAGCTACGACATATTTAACGATTTTCCGCAGCACCAACAGCACAACAAGAACATCAGCAATAAACTAAACGATTGGGATC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT4G16 TGCGGAATATGGGATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCACTTCGGAAGCATACTCTTCGTCTTCTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TGCGGAATATGGGATTGGTCTTCAGTTCCAATCAGGACGCAGCAACTGCAACCGCAACCGCAGCATTTTCCACTTCGGAAGCATACTCTTCGTCTTCTAC 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT4G16 GCAGAGAAAAAGACGGGAAACGGACGCAACAGTTGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCACGTTTTT ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 GCAGAGAAAAAGACGTGAAACGGACGCAACAGTTGTGGGTGAGCATGGGCAGAACCTGCAGTCACCGAGCCGGAATCTGTATCATCTGAACCACGTTTTT 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 AT4G16 ATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGACTTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 ATGGACGGTGGTTCAGTCAGAGTGAAGTCAGAAAGAGTGGCGGAGACAGTGACTTGTCCTCCAGCAAATACATTGTTTCACGAGCAGTATAATCAAGAAG 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 AT4G16 ATCTGATGAGCGCATTTCTCAAACAGGAAGGCATCCCATCCGTAGATAACGAGTTCGAATTTGACGGATACTCCATCGATAATATCCAGGTC ::::::::::::::::::::::::::: RE_086 ATCTGATGAGCGCATTTCTCAAACAGGTT--------------------------------------------------------------- 1910 1920 10 20 30 40 50 60 70 80 90 100 AT4G16 MVNPGHGRGPDSGTAAGGSNSDPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMD ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 MVNPGHGRGPDSGTAAGGSNSGPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G16 LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEE 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G16 VDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 VDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLS 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G16 SLNGFDLQSLAVTGQLPPQSLAQLQAAGLGRPTLAKPGMSVSPLVDQRSIFNFENPKIRFGDGHGQTMNNGNLLHGVPTGSHMRLRPGQNVQSSGMMLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 SLNGFDLQSLAVTGQLPPQSLAQLQAAGLGRPTLAKPGMSVSPLVDQRSIFNFENPKIRFGDGHGQTMNNGNLLHGVPTGSHMRLRPGQNVQSSGMMLPV 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G16 ADQLPRGGPSMLPSLGQQPILSSSVSRRSDLTGALAVRNSIPETNSRVLPTTHSVFNNFPADLPRSSFPLASAPGISVPVSVSYQEEVNSSDAKGGSSAA :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_086 ADQLPRGGPSMLPSLGQQPILSSSVSRRSDLTGALAVRNSIPETNSRVLPTTHSAFNNFPADLPRSSFPLASAPGISVPVSVSYQEEVNSSDAKGGSSAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G16 TAGFGNPSYDIFNDFPQHQQHNKNISNKLNDWDLRNMGLVFSSNQDAATATATAAFSTSEAYSSSSTQRKRRETDATVVGEHGQNLQSPSRNLYHLNHVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_086 TAGFGNPSYDIFNDFPQHQQHNKNISNKLNDWDLRNMGLVFSSNQDAATATATAAFSTSEAYSSSSTQRKRRETDATVVGEHGQNLQSPSRNLYHLNHVF 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 AT4G16 MDGGSVRVKSERVAETVTCPPANTLFHEQYNQEDLMSAFLKQEGIPSVDNEFEFDGYSIDNIQV :::::::::::::::::::::::::::::::::::::::::: RE_086 MDGGSVRVKSERVAETVTCPPANTLFHEQYNQEDLMSAFLKQV--------------------- 610 620 630 640

このページのTOPに戻る