◆◆◆RE_0876 detail◆◆◆

Code name	RE_0876
Locus	AT5G06800
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列98.40%一致
comment	0229_アミノ酸配列70%以上一致
sequence	>RE_0876_1140bp ATGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGGAAGCCGGCTACAGTTGCAGCAACAACCGCCCCAGCCGTTTAATTTACAAGACTTGA ATATGATTCAATACAATCAACCATCATCTCCTTGGACTACGGAGACCTTCTCTGGTCTAACTCCGTACGATTGCACAGCCAATCAATCTTTTCCCGTACA ATGTTCATCTTCAAAACCCTACCCTTCCTCGTTTCATCCGTACCATCATCAATCTTCTGATTCTCCATCATTAGACCAATCTGTATCGATGATTCCTATG CAGCCTCTTCCGGATCAATATATGAAGCCATTATATCAAAGATCTTGCTCGAACGATTTTGCCGCAACAAATGCTTCATCAGCCTCTTACTCGCTTTCTT TTGAAGCAAGTCATGATCCACAAGAACTATGCAGAAGGACCTATAGTAATTCTAATGTAACACATCTTAATTTCACATCATCACAACATCAACCTAAACA GAGTCATCCAAGATTTTCTTCTCCTCCTTCATTCTCAATCCATGGAGGGTCTATGGCTCCTAACTGTGTGAACAAGACACGGATAAGATGGACTCAAGAT CTTCATGAGAAGTTTGTGGAGTGCGTTAATCGTCTTGGTGGCGCTGATAAGGCGACGCCCAAGGCGATATTGAAGCGGATGGATTCTGATGGACTCACAA TATTTCACGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCTGAGTCTCAAGAAGAGTTTTGTGTTGCAGGCAAGTTTGAGAAAAGAGC TTGTGCAAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAGTGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAA CTAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGATGATGGAACAACAACAAAAAAACAAAGAGAGTCTTCTGA AGAAGCTACCAGACGCTGAAGCATCATTGTCTCTTCTCGATCCCCATATTCACTCTCCTCCTTCGCCTTTCTTGGTACACGACGCTGAAGCCCCGATGCT AACAAGTTATGAAGACACTCAACTCCAGTCCACCAAAAGT >RE_0876_translated MMDNINFEFSNASQGSRLQLQQQPPQPFNLQDLNMIQYNQPSSPWTTETFSGLTPYDCTANQSFPVQCSSSKPYPSSFHPYHHQSSDSPSLDQSVSMIPM QPLPDQYMKPLYQRSCSNDFAATNASSASYSLSFEASHDPQELCRRTYSNSNVTHLNFTSSQHQPKQSHPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQD LHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMPESQEEFCVAGKFEKRACAKELSQLDTRTGVQIKEALQLQLDVQRHLHEQ LEIQRNLQLRIEEQGKQLKMMMEQQQKNKESLLKKLPDAEASLSLLDPHIHSPPSPFLVHDAEAPMLTSYEDTQLQSTKS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1124/1140 (98.6%)（アミノ酸配列で374/380 (98.4%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G06 ATGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGGAAGCCGGCTACAGTTGCAGCAACAACCGCCCCAGCCGTTTAATTTACAAGACTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 ATGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGGAAGCCGGCTACAGTTGCAGCAACAACCGCCCCAGCCGTTTAATTTACAAGACTTGA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G06 ATATGATTCAATACAATCAACCATCATCTCCTTGGACTACGGAGACCTTCTCTGGTCTAACTCCGTACGATTGCACAGCCAATCAATCTTTTCCCGTACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 ATATGATTCAATACAATCAACCATCATCTCCTTGGACTACGGAGACCTTCTCTGGTCTAACTCCGTACGATTGCACAGCCAATCAATCTTTTCCCGTACA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G06 ATGTTCATCTTCAAAACCCTACCCTTCCTCGTTTCATCCGTACCATCATCAATCTTCTGATTCTCCATCATTAGACCAATCTGTATCGATGATTCCTATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 ATGTTCATCTTCAAAACCCTACCCTTCCTCGTTTCATCCGTACCATCATCAATCTTCTGATTCTCCATCATTAGACCAATCTGTATCGATGATTCCTATG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G06 CAGCCTCTTCCGGATCAATATATGAAGCCATTATATCAAAGATCTTGCTCGAACGATTTTGCCGCAACAAATGCTTCATCAGCCTCTTACTCGCTTTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 CAGCCTCTTCCGGATCAATATATGAAGCCATTATATCAAAGATCTTGCTCGAACGATTTTGCCGCAACAAATGCTTCATCAGCCTCTTACTCGCTTTCTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G06 TTGAAGCAAGTCATGATCCACAAGAACTATGCAGAAGGACCTATAGTAATTCTAATGTAACACATCTTAATTTCACATCATCACAACATCAACCTAAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 TTGAAGCAAGTCATGATCCACAAGAACTATGCAGAAGGACCTATAGTAATTCTAATGTAACACATCTTAATTTCACATCATCACAACATCAACCTAAACA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G06 GAGTCATCCAAGATTTTCTTCTCCTCCTTCATTCTCAATCCATGGAGGGTCTATGGCTCCTAACTGTGTGAACAAGACACGGATAAGATGGACTCAAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 GAGTCATCCAAGATTTTCTTCTCCTCCTTCATTCTCAATCCATGGAGGGTCTATGGCTCCTAACTGTGTGAACAAGACACGGATAAGATGGACTCAAGAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G06 CTTCATGAGAAGTTTGTGGAGTGCGTTAATCGTCTTGGTGGCGCTGATAAGGCGACGCCCAAGGCGATATTGAAGCGGATGGATTCTGATGGACTCACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 CTTCATGAGAAGTTTGTGGAGTGCGTTAATCGTCTTGGTGGCGCTGATAAGGCGACGCCCAAGGCGATATTGAAGCGGATGGATTCTGATGGACTCACAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 AT5G06 TATTTCACGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCTGAGTCTCAAGA---------------AGGCAAGTTTGAGAAAAGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: RE_087 TATTTCACGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCTGAGTCTCAAGAAGAGTTTTGTGTTGCAGGCAAGTTTGAGAAAAGAGC 710 720 730 740 750 760 770 780 790 800 790 800 810 820 830 840 850 860 870 880 AT5G06 TTGTGCAAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAGTGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 TTGTGCAAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAGTGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAA 810 820 830 840 850 860 870 880 890 900 890 900 910 920 930 940 950 960 970 980 AT5G06 CTAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGATGATGGAACAACAACAAAAAAACAAAGAGAGTCTTCTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 CTAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGATGATGGAACAACAACAAAAAAACAAAGAGAGTCTTCTGA 910 920 930 940 950 960 970 980 990 1000 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 AT5G06 AGAAGCTACCAGACGCTGAAGCATCATTGTCTCTTCTCGATCCCCATATTCACTCTCCTCCTTCGCCTTTCTTGGTACACGACGCTGAAGCCCTGATGCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: RE_087 AGAAGCTACCAGACGCTGAAGCATCATTGTCTCTTCTCGATCCCCATATTCACTCTCCTCCTTCGCCTTTCTTGGTACACGACGCTGAAGCCCCGATGCT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1090 1100 1110 1120 AT5G06 AACAAGTTATGAAGACACTCAACTCCAGTCCACCAAAAGT :::::::::::::::::::::::::::::::::::::::: RE_087 AACAAGTTATGAAGACACTCAACTCCAGTCCACCAAAAGT 1110 1120 1130 1140 10 20 30 40 50 60 70 80 90 100 AT5G06 MMDNINFEFSNASQGSRLQLQQQPPQPFNLQDLNMIQYNQPSSPWTTETFSGLTPYDCTANQSFPVQCSSSKPYPSSFHPYHHQSSDSPSLDQSVSMIPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 MMDNINFEFSNASQGSRLQLQQQPPQPFNLQDLNMIQYNQPSSPWTTETFSGLTPYDCTANQSFPVQCSSSKPYPSSFHPYHHQSSDSPSLDQSVSMIPM 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G06 QPLPDQYMKPLYQRSCSNDFAATNASSASYSLSFEASHDPQELCRRTYSNSNVTHLNFTSSQHQPKQSHPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 QPLPDQYMKPLYQRSCSNDFAATNASSASYSLSFEASHDPQELCRRTYSNSNVTHLNFTSSQHQPKQSHPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQD 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 AT5G06 LHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMPESQE-----GKFEKRACAKELSQLDTRTGVQIKEALQLQLDVQRHLHEQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: RE_087 LHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYMPESQEEFCVAGKFEKRACAKELSQLDTRTGVQIKEALQLQLDVQRHLHEQ 210 220 230 240 250 260 270 280 290 300 300 310 320 330 340 350 360 370 AT5G06 LEIQRNLQLRIEEQGKQLKMMMEQQQKNKESLLKKLPDAEASLSLLDPHIHSPPSPFLVHDAEALMLTSYEDTQLQSTKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::: RE_087 LEIQRNLQLRIEEQGKQLKMMMEQQQKNKESLLKKLPDAEASLSLLDPHIHSPPSPFLVHDAEAPMLTSYEDTQLQSTKS 310 320 330 340 350 360 370 380

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