◆◆◆RE_0877 detail◆◆◆

Code name	RE_0877
Locus	AT5G16560
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0311_アミノ酸配列70%以上一致
sequence	>RE_0877_1209bp ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCTGATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAAT ACCATCACAATGAATCTTCTAAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAACTCTCTTTATCTCATCATAA CCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGAACCCGTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGTGTTCATCAA AGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATCCCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTTCAT TACCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTACAACAACGCTTACCGATCATTACAATCTTCCCCGAGGCT TAAAGGTGTTCCTTTGCATCATCATCATCATCATAATCAGTATGGAGTCGTTGGATCTTCAGATTCGTCTTCTCCTCATCACCATAACCATCATCATCAT AGGATGATCAGATCAAGATTCTTGCCTAAGATGCCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGGTTTGTTC ACGCTGTTGAGCTTCTAGGCGGCCATGAAAGAGCAACTCCAAAGTCGGTTCTTGAGCTCATGGATGTAAAAGACTTAACTTTAGCACATGTGAAGAGCCA TTTGCAGATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGAAGAAGAAATGGGCATAAATGGAAACGAAGTTCAT CATCAATCATCGACGGATCAAAGGGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCGTTGGAGTAACTCTTCAC GAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGATACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCAT TCAAAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAAAATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGG CACGAGAAA >RE_0877_translated MSMEGVFLEKTKTNTTTTLPDLSLHISLPDIHQYHHNESSKESSRRSSQLENNNRSSNFELSLSHHNHPTARIFHCPDRRTRNLPHQQHYNNPIINGVHQ RVDESEISNLHRPIRGIPVYHNRSFPFHQQNSSLPSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHH RMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVH HQSSTDQRAQSDDTSLHQETDISSTQPRWSNSSRETWPLSNNCSSDIDTMIRTSSTSMISHYQRSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLGRPDW HEK
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1207/1209 (99.8%)（アミノ酸配列で401/403 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G16 ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCTGATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCTGATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G16 ACCATCACAATGAATCTTCTAAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAACTCTCTTTATCTCATCATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 ACCATCACAATGAATCTTCTAAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAACTCTCTTTATCTCATCATAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G16 CCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGAACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGTGTTCATCAA :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 CCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGAACCCGTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGTGTTCATCAA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G16 AGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATCCCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 AGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATCCCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTTCAT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G16 TACCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTACAACAACGCTTACCGATCATTACAATCTTCCCCGAGGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 TACCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTACAACAACGCTTACCGATCATTACAATCTTCCCCGAGGCT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G16 TAAAGGTGTTCCTTTGCATCATCATCATCATCATAATCAGTATGGAGTCGTTGGATCTTCAGATTCGTCTTCTCCTCATCACCATAACCATCATCATCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 TAAAGGTGTTCCTTTGCATCATCATCATCATCATAATCAGTATGGAGTCGTTGGATCTTCAGATTCGTCTTCTCCTCATCACCATAACCATCATCATCAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G16 GGGATGATCAGATCAAGATTCTTGCCTAAGATGCCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGGTTTGTTC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 AGGATGATCAGATCAAGATTCTTGCCTAAGATGCCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGGTTTGTTC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G16 ACGCTGTTGAGCTTCTAGGCGGCCATGAAAGAGCAACTCCAAAGTCGGTTCTTGAGCTCATGGATGTAAAAGACTTAACTTTAGCACATGTGAAGAGCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 ACGCTGTTGAGCTTCTAGGCGGCCATGAAAGAGCAACTCCAAAGTCGGTTCTTGAGCTCATGGATGTAAAAGACTTAACTTTAGCACATGTGAAGAGCCA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G16 TTTGCAGATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGAAGAAGAAATGGGCATAAATGGAAACGAAGTTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 TTTGCAGATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGAAGAAGAAATGGGCATAAATGGAAACGAAGTTCAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G16 CATCAATCATCGACGGATCAAAGGGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCGTTGGAGTAACTCTTCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 CATCAATCATCGACGGATCAAAGGGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCGTTGGAGTAACTCTTCAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G16 GAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGATACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 GAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGATACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCAT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G16 TCAAAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAAAATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 TCAAAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAAAATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G16 CACGAGAAA ::::::::: RE_087 CACGAGAAA 10 20 30 40 50 60 70 80 90 100 AT5G16 MSMEGVFLEKTKTNTTTTLPDLSLHISLPDIHQYHHNESSKESSRRSSQLENNNRSSNFELSLSHHNHPTARIFHCPDRRTLNLPHQQHYNNPIINGVHQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: RE_087 MSMEGVFLEKTKTNTTTTLPDLSLHISLPDIHQYHHNESSKESSRRSSQLENNNRSSNFELSLSHHNHPTARIFHCPDRRTRNLPHQQHYNNPIINGVHQ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G16 RVDESEISNLHRPIRGIPVYHNRSFPFHQQNSSLPSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 RVDESEISNLHRPIRGIPVYHNRSFPFHQQNSSLPSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHH 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G16 GMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 RMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVH 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G16 HQSSTDQRAQSDDTSLHQETDISSTQPRWSNSSRETWPLSNNCSSDIDTMIRTSSTSMISHYQRSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLGRPDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_087 HQSSTDQRAQSDDTSLHQETDISSTQPRWSNSSRETWPLSNNCSSDIDTMIRTSSTSMISHYQRSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLGRPDW 310 320 330 340 350 360 370 380 390 400 AT5G16 HEK ::: RE_087 HEK

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