◆◆◆RE_0887 detail◆◆◆

Code name	RE_0887
Locus	AT1G21450
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0311_アミノ酸配列100%一致
sequence	>RE_0887_1779bp ATGGTGGAACAAACTGTGGTTAGAGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAGGAACCCGAAGCTTTACA CGTTGAATGAGAATGGTAATAACAATGGTGTCAGTTCTGCTCAAATCTTTGATCCAGATAGGTCAAAGAATCCTTGTCTGACTGATGATTCTTACCCAAG CCAAAGTTATGAGAAGTACTTTCTTGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGGCTCTGGTGCCTCGGTTAGCTCATTTGGCTCTTTAGAC TCATTTCCTTATCAGTCAAGACCAGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTGGATTCAACCTCTACTTCATCTACAAGGCTTTTGGGAGATT ACCAAGCGGTTTCTTACAGTCCGAGCATGGATGTAGTGGAGGAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGG CGATGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCGTACCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAA GAATCATCGTCTGCAGATTCCAACTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATATCTTGTGCTCGTGCGCTAT CTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAGCTGAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGT GGAAGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGCAAAGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAA GTCCTGTTTGAAGTCTGCCCTTGTTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAAGAAGAAGTTCACATAATCG ATTTCGATATAAACCAAGGGAACCAATACATGACACTGATACGAAGCATTGCTGAGTTGCCTGGTAAACGACCTCGCCTGAGGTTAACAGGAATTGATGA CCCTGAATCAGTCCAACGCTCCATTGGAGGGCTAAGAATCATCGGTCTAAGACTCGAGCAACTCGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCG ATGCCTTCAAAGACTTCGATTGTCTCTCCATCAACACTCGGTTGCAAACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCAACTTCACCACATGCCTG ACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCACATGGTCAAAAGCTTAAACCCAAAGCTTGTCACGGTCGTTGAACAAGACGTGAACAC AAACACTTCACCGTTCTTTCCCAGATTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGAGTCTCTAGACATGACACTTCCAAGAGAAAGCCAAGAG AGGATGAATGTAGAAAGACAGTGTCTCGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATACGAGGCTGCGGGAAAAT GGAGAGCAAGGATGATGATGGCTGGATTCAATCCAAAACCAATGAGTGCTAAAGTAACCAACAATATACAAAACCTGATAAAGCAACAATATTGCAATAA GTACAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTTGCTTCAGCTTGGAGG >RE_0887_translated MVEQTVVREHIKARVMSLVRSAEPSSYRNPKLYTLNENGNNNGVSSAQIFDPDRSKNPCLTDDSYPSQSYEKYFLDSPTDEFVQHPIGSGASVSSFGSLD SFPYQSRPVLGCSMEFQLPLDSTSTSSTRLLGDYQAVSYSPSMDVVEEFDDEQMRSKIQELERALLGDEDDKMVGIDNLMEIDSEWSYQNESEQHQDSPK ESSSADSNSHVSSKEVVSQATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAMQ VLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKA MPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQE RMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1778/1779 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G21 ATGGTGGAACAAACTGTGGTTAGAGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAGGAACCCGAAGCTTTACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 ATGGTGGAACAAACTGTGGTTAGAGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAGGAACCCGAAGCTTTACA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G21 CGTTGAATGAGAATGGTAATAACAATGGTGTCAGTTCTGCTCAAATCTTTGATCCAGATAGGTCAAAGAATCCTTGTCTGACTGATGATTCTTACCCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CGTTGAATGAGAATGGTAATAACAATGGTGTCAGTTCTGCTCAAATCTTTGATCCAGATAGGTCAAAGAATCCTTGTCTGACTGATGATTCTTACCCAAG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G21 CCAAAGTTATGAGAAGTACTTTCTTGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGGCTCTGGTGCCTCGGTTAGCTCATTTGGCTCTTTAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CCAAAGTTATGAGAAGTACTTTCTTGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGGCTCTGGTGCCTCGGTTAGCTCATTTGGCTCTTTAGAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G21 TCATTTCCTTATCAGTCAAGACCAGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTGGATTCAACCTCTACTTCATCTACAAGGCTTTTGGGAGATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TCATTTCCTTATCAGTCAAGACCAGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTGGATTCAACCTCTACTTCATCTACAAGGCTTTTGGGAGATT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G21 ACCAAGCGGTTTCTTACAGTCCGAGCATGGATGTAGTGGAGGAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 ACCAAGCGGTTTCTTACAGTCCGAGCATGGATGTAGTGGAGGAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G21 CGATGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCGTACCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CGATGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCGTACCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G21 GAATCATCGTCTGCAGATTCCAACTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATATCTTGTGCTCGTGCGCTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GAATCATCGTCTGCAGATTCCAACTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATATCTTGTGCTCGTGCGCTAT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G21 CTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAGCTGAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAGCTGAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G21 GGAAGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGCAAAGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GGAAGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGCAAAGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G21 GTCCTGTTTGAAGTCTGCCCTTGTTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAAGAAGAAGTTCACATAATCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GTCCTGTTTGAAGTCTGCCCTTGTTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAAGAAGAAGTTCACATAATCG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G21 ATTTCGATATAAACCAAGGGAACCAATACATGACACTGATACGAAGCATTGCTGAGTTGCCTGGTAAACGACCTCGCCTGAGGTTAACAGGAATTGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 ATTTCGATATAAACCAAGGGAACCAATACATGACACTGATACGAAGCATTGCTGAGTTGCCTGGTAAACGACCTCGCCTGAGGTTAACAGGAATTGATGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT1G21 CCCTGAATCAGTCCAACGCTCCATTGGAGGGCTAAGAATCATCGGTCTAAGACTCGAGCAACTCGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CCCTGAATCAGTCCAACGCTCCATTGGAGGGCTAAGAATCATCGGTCTAAGACTCGAGCAACTCGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT1G21 ATGCCTTCAAAGACTTCGATTGTCTCTCCATCAACACTCGGTTGCAAACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCAACTTCACCACATGCCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 ATGCCTTCAAAGACTTCGATTGTCTCTCCATCAACACTCGGTTGCAAACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCAACTTCACCACATGCCTG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT1G21 ACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCACATGGTCAAAAGCTTAAACCCAAAGCTTGTCACGGTCGTTGAACAAGACGTGAACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 ACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCACATGGTCAAAAGCTTAAACCCAAAGCTTGTCACGGTCGTTGAACAAGACGTGAACAC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT1G21 AAACACTTCACCGTTCTTTCCCAGATTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGAGTCTCTAGACATGACACTTCCAAGAGAAAGCCAAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 AAACACTTCACCGTTCTTTCCCAGATTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGAGTCTCTAGACATGACACTTCCAAGAGAAAGCCAAGAG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT1G21 AGGATGAATGTAGAAAGACAGTGTCTCGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATACGAGGCTGCGGGAAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 AGGATGAATGTAGAAAGACAGTGTCTCGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATACGAGGCTGCGGGAAAAT 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT1G21 GGAGAGCAAGGATGATGATGGCTGGATTCAATCCAAAACCAATGAGTGCTAAAGTAACCAACAATATACAAAACCTGATAAAGCAACAATATTGCAATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GGAGAGCAAGGATGATGATGGCTGGATTCAATCCAAAACCAATGAGTGCTAAAGTAACCAACAATATACAAAACCTGATAAAGCAACAATATTGCAATAA 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 AT1G21 GTACAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTTGCTTCAGCTTGGAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GTACAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTTGCTTCAGCTTGGAGG 1710 1720 1730 1740 1750 1760 1770 10 20 30 40 50 60 70 80 90 100 AT1G21 MVEQTVVREHIKARVMSLVRSAEPSSYRNPKLYTLNENGNNNGVSSAQIFDPDRSKNPCLTDDSYPSQSYEKYFLDSPTDEFVQHPIGSGASVSSFGSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 MVEQTVVREHIKARVMSLVRSAEPSSYRNPKLYTLNENGNNNGVSSAQIFDPDRSKNPCLTDDSYPSQSYEKYFLDSPTDEFVQHPIGSGASVSSFGSLD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G21 SFPYQSRPVLGCSMEFQLPLDSTSTSSTRLLGDYQAVSYSPSMDVVEEFDDEQMRSKIQELERALLGDEDDKMVGIDNLMEIDSEWSYQNESEQHQDSPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 SFPYQSRPVLGCSMEFQLPLDSTSTSSTRLLGDYQAVSYSPSMDVVEEFDDEQMRSKIQELERALLGDEDDKMVGIDNLMEIDSEWSYQNESEQHQDSPK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G21 ESSSADSNSHVSSKEVVSQATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAMQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 ESSSADSNSHVSSKEVVSQATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAMQ 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G21 VLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 VLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFKA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G21 MPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 MPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQE 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 AT1G21 RMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 RMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 510 520 530 540 550 560 570 580 590

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