◆◆◆RE_0889 detail◆◆◆

Code name	RE_0889
Locus	AT1G50600
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列88.10%一致
comment	0526_third_0889_FRW1W2_5555
sequence	>RE_0889_1578bp ATGGAAGCTACTCAGAAACATATGATTCAAGAAGGATCTTCAATGTTTTACCATCAACCATCTTCAGTCAAACAAATGGACCTTTCTGTTCAGACATTTG ATTCTTACTGCACACTTGAATCCTCTTCAGGCACCAAGTCTCATCCTTGTCTTAACAACAAAAACAACTCTTCTTCAACCACAAGCTTTTCCTCTAATGA AAGTCCCATTTCTCAAGCCAACAACAACAACTTATCAAGGTTTAACAATCATTCCCCTGAAGAAAACAATAACTCTCCCTTGAGCGGTTCTTCAGCGACA AACACCAACGAGACAGAGCTTAGTCTCATGCTTAAAGATTTGGAGACTGCAATGATGGAGCCTGATGTAGACAACAGCTATAACAATCAAGGCGGGTTTG GACAGCAGCATGGAGTTGTTTCTTCAGCTATGTATAGATCTATGGAGATGATCTCTAGGGGAGATTTAAAAGGAGTGCTCTATGAATGCGCAAAAGCTGT TGAAAACTATGATTTGGAAATGACTGATTGGTTGATCTCTCAGTTACAGCAAATGGTTTCTGTTTCTGGTGAGCCTGTTCAGCGCTTAGGAGCTTATATG CTTGAAGGTCTCGTTGCTAGGTTAGCTTCTTCGGGTAGCTCCATCTATAAAGCATTGAGATGCAAAGACCCAACGGGTCCTGAGCTTCTTACTTATATGC ATATCTTGTATGAAGCCTGCCCTTATTTCAAATTCGGTTATGAATCTGCTAATGGAGCTATAGCTGAAGCTGTGAAGAACGAAAGTTTTGTGCACATTAT CGATTTCCAGATTTCTCAAGGTGGTCAATGGGTGAGTTTGATCCGTGCTCTTGGTGCTAGACCTGGTGGACCTCCGAACGTTAGGATAACGGGAATTGAT GATCCGAGATCATCGTTTGCTCGTCAAGGAGGACTTGAGTTAGTTGGACAAAGACTTGGGAAGCTAGCTGAAATGTGCGGTGTTCCGTTTGAGTTCCATG GAGCTGCTTTATGCTGCACGGAAGTCGAAATCGAGAAGCTAGGAGTTAGAAATGGAGAAGCGCTCGCGGTTAACTTCCCGCTTGTTCTTCACCACATGCC TGATGAGAGTGTAACTGTGGAGAATCACAGAGATAGATTGTTGAGATTGGTCAAACACTTGTCACCAAACGTTGTGACTCTGGTTGAGCAAGAAGCGAAT ACAAACACTGCGCCGTTTCTTCCCCGGTTTGTCGAGACAATGAACCATTACTTGGCAGTTTTCGAATCAATAGATGTGAAACTCGCTAGAGATCACAAGG AAAGGATCAATGTTGAGCAGCATTGTTTGGCTAGAGAGGTTGTGAATCTTATAGCTTGTGAAGGTGTTGAAAGAGAAGAGAGGCACGAGCCACTAGGGAA ATGGAGGTCTCGGTTTCACATGGCGGGATTTAAACCGTATCCTTTGAGCTCGTATGTGAACGCAACAATCAAAGGATTGCTTGAGAGTTATTCAGAGAAG TATACACTTGAAGAAAGAGATGGAGCATTGTATTTAGGATGGAAGAATCAACCTCTTATCACTTCTTGTGCTTGGAGG >RE_0889_translated MEATQKHMIQEGSSMFYHQPSSVKQMDLSVQTFDSYCTLESSSGTKSHPCLNNKNNSSSTTSFSSNESPISQANNNNLSRFNNHSPEENNNSPLSGSSAT NTNETELSLMLKDLETAMMEPDVDNSYNNQGGFGQQHGVVSSAMYRSMEMISRGDLKGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYM LEGLVARLASSGSSIYKALRCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGID DPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEAN TNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK YTLEERDGALYLGWKNQPLITSCAWR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1578/1791 (88.1%)（アミノ酸配列で526/597 (88.1%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G50 ATGAGGTTAAGCGTTTTTATTATTCCCCTGGTGGAAAGTAGGCAAGCAAGTGGTATCATCAACAAACAAAGCACTTCTCTTTTGATTCGATTCTCTCTTT RE_088 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT1G50 ACCTTGAAGCTTCAATATCAACCAAATCTTTTTTCTCAAAATCTCAAAGAATCTCTCAAACTCAGTCTCCTATCTGTCTCTCTGCAAACTATTACCAACC RE_088 ---------------------------------------------------------------------------------------------------- 210 220 230 240 250 260 270 280 290 300 AT1G50 AGATAATTTAGATATGGAAGCTACTCAGAAACATATGATTCAAGAAGGATCTTCAATGTTTTACCATCAACCATCTTCAGTCAAACAAATGGACCTTTCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 -------------ATGGAAGCTACTCAGAAACATATGATTCAAGAAGGATCTTCAATGTTTTACCATCAACCATCTTCAGTCAAACAAATGGACCTTTCT 10 20 30 40 50 60 70 80 310 320 330 340 350 360 370 380 390 400 AT1G50 GTTCAGACATTTGATTCTTACTGCACACTTGAATCCTCTTCAGGCACCAAGTCTCATCCTTGTCTTAACAACAAAAACAACTCTTCTTCAACCACAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GTTCAGACATTTGATTCTTACTGCACACTTGAATCCTCTTCAGGCACCAAGTCTCATCCTTGTCTTAACAACAAAAACAACTCTTCTTCAACCACAAGCT 90 100 110 120 130 140 150 160 170 180 410 420 430 440 450 460 470 480 490 500 AT1G50 TTTCCTCTAATGAAAGTCCCATTTCTCAAGCCAACAACAACAACTTATCAAGGTTTAACAATCATTCCCCTGAAGAAAACAATAACTCTCCCTTGAGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TTTCCTCTAATGAAAGTCCCATTTCTCAAGCCAACAACAACAACTTATCAAGGTTTAACAATCATTCCCCTGAAGAAAACAATAACTCTCCCTTGAGCGG 190 200 210 220 230 240 250 260 270 280 510 520 530 540 550 560 570 580 590 600 AT1G50 TTCTTCAGCGACAAACACCAACGAGACAGAGCTTAGTCTCATGCTTAAAGATTTGGAGACTGCAATGATGGAGCCTGATGTAGACAACAGCTATAACAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TTCTTCAGCGACAAACACCAACGAGACAGAGCTTAGTCTCATGCTTAAAGATTTGGAGACTGCAATGATGGAGCCTGATGTAGACAACAGCTATAACAAT 290 300 310 320 330 340 350 360 370 380 610 620 630 640 650 660 670 680 690 700 AT1G50 CAAGGCGGGTTTGGACAGCAGCATGGAGTTGTTTCTTCAGCTATGTATAGATCTATGGAGATGATCTCTAGGGGAGATTTAAAAGGAGTGCTCTATGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CAAGGCGGGTTTGGACAGCAGCATGGAGTTGTTTCTTCAGCTATGTATAGATCTATGGAGATGATCTCTAGGGGAGATTTAAAAGGAGTGCTCTATGAAT 390 400 410 420 430 440 450 460 470 480 710 720 730 740 750 760 770 780 790 800 AT1G50 GCGCAAAAGCTGTTGAAAACTATGATTTGGAAATGACTGATTGGTTGATCTCTCAGTTACAGCAAATGGTTTCTGTTTCTGGTGAGCCTGTTCAGCGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GCGCAAAAGCTGTTGAAAACTATGATTTGGAAATGACTGATTGGTTGATCTCTCAGTTACAGCAAATGGTTTCTGTTTCTGGTGAGCCTGTTCAGCGCTT 490 500 510 520 530 540 550 560 570 580 810 820 830 840 850 860 870 880 890 900 AT1G50 AGGAGCTTATATGCTTGAAGGTCTCGTTGCTAGGTTAGCTTCTTCGGGTAGCTCCATCTATAAAGCATTGAGATGCAAAGACCCAACGGGTCCTGAGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 AGGAGCTTATATGCTTGAAGGTCTCGTTGCTAGGTTAGCTTCTTCGGGTAGCTCCATCTATAAAGCATTGAGATGCAAAGACCCAACGGGTCCTGAGCTT 590 600 610 620 630 640 650 660 670 680 910 920 930 940 950 960 970 980 990 1000 AT1G50 CTTACTTATATGCATATCTTGTATGAAGCCTGCCCTTATTTCAAATTCGGTTATGAATCTGCTAATGGAGCTATAGCTGAAGCTGTGAAGAACGAAAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 CTTACTTATATGCATATCTTGTATGAAGCCTGCCCTTATTTCAAATTCGGTTATGAATCTGCTAATGGAGCTATAGCTGAAGCTGTGAAGAACGAAAGTT 690 700 710 720 730 740 750 760 770 780 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G50 TTGTGCACATTATCGATTTCCAGATTTCTCAAGGTGGTCAATGGGTGAGTTTGATCCGTGCTCTTGGTGCTAGACCTGGTGGACCTCCGAACGTTAGGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TTGTGCACATTATCGATTTCCAGATTTCTCAAGGTGGTCAATGGGTGAGTTTGATCCGTGCTCTTGGTGCTAGACCTGGTGGACCTCCGAACGTTAGGAT 790 800 810 820 830 840 850 860 870 880 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT1G50 AACGGGAATTGATGATCCGAGATCATCGTTTGCTCGTCAAGGAGGACTTGAGTTAGTTGGACAAAGACTTGGGAAGCTAGCTGAAATGTGCGGTGTTCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 AACGGGAATTGATGATCCGAGATCATCGTTTGCTCGTCAAGGAGGACTTGAGTTAGTTGGACAAAGACTTGGGAAGCTAGCTGAAATGTGCGGTGTTCCG 890 900 910 920 930 940 950 960 970 980 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT1G50 TTTGAGTTCCATGGAGCTGCTTTATGCTGCACGGAAGTCGAAATCGAGAAGCTAGGAGTTAGAAATGGAGAAGCGCTCGCGGTTAACTTCCCGCTTGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TTTGAGTTCCATGGAGCTGCTTTATGCTGCACGGAAGTCGAAATCGAGAAGCTAGGAGTTAGAAATGGAGAAGCGCTCGCGGTTAACTTCCCGCTTGTTC 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT1G50 TTCACCACATGCCTGATGAGAGTGTAACTGTGGAGAATCACAGAGATAGATTGTTGAGATTGGTCAAACACTTGTCACCAAACGTTGTGACTCTGGTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TTCACCACATGCCTGATGAGAGTGTAACTGTGGAGAATCACAGAGATAGATTGTTGAGATTGGTCAAACACTTGTCACCAAACGTTGTGACTCTGGTTGA 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT1G50 GCAAGAAGCGAATACAAACACTGCGCCGTTTCTTCCCCGGTTTGTCGAGACAATGAACCATTACTTGGCAGTTTTCGAATCAATAGATGTGAAACTCGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 GCAAGAAGCGAATACAAACACTGCGCCGTTTCTTCCCCGGTTTGTCGAGACAATGAACCATTACTTGGCAGTTTTCGAATCAATAGATGTGAAACTCGCT 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT1G50 AGAGATCACAAGGAAAGGATCAATGTTGAGCAGCATTGTTTGGCTAGAGAGGTTGTGAATCTTATAGCTTGTGAAGGTGTTGAAAGAGAAGAGAGGCACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 AGAGATCACAAGGAAAGGATCAATGTTGAGCAGCATTGTTTGGCTAGAGAGGTTGTGAATCTTATAGCTTGTGAAGGTGTTGAAAGAGAAGAGAGGCACG 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT1G50 AGCCACTAGGGAAATGGAGGTCTCGGTTTCACATGGCGGGATTTAAACCGTATCCTTTGAGCTCGTATGTGAACGCAACAATCAAAGGATTGCTTGAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 AGCCACTAGGGAAATGGAGGTCTCGGTTTCACATGGCGGGATTTAAACCGTATCCTTTGAGCTCGTATGTGAACGCAACAATCAAAGGATTGCTTGAGAG 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1710 1720 1730 1740 1750 1760 1770 1780 1790 AT1G50 TTATTCAGAGAAGTATACACTTGAAGAAAGAGATGGAGCATTGTATTTAGGATGGAAGAATCAACCTCTTATCACTTCTTGTGCTTGGAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 TTATTCAGAGAAGTATACACTTGAAGAAAGAGATGGAGCATTGTATTTAGGATGGAAGAATCAACCTCTTATCACTTCTTGTGCTTGGAGG 1490 1500 1510 1520 1530 1540 1550 1560 1570 10 20 30 40 50 60 70 80 90 100 AT1G50 MRLSVFIIPLVESRQASGIINKQSTSLLIRFSLYLEASISTKSFFSKSQRISQTQSPICLSANYYQPDNLDMEATQKHMIQEGSSMFYHQPSSVKQMDLS ::::::::::::::::::::::::::::: RE_088 -----------------------------------------------------------------------MEATQKHMIQEGSSMFYHQPSSVKQMDLS 10 20 110 120 130 140 150 160 170 180 190 200 AT1G50 VQTFDSYCTLESSSGTKSHPCLNNKNNSSSTTSFSSNESPISQANNNNLSRFNNHSPEENNNSPLSGSSATNTNETELSLMLKDLETAMMEPDVDNSYNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 VQTFDSYCTLESSSGTKSHPCLNNKNNSSSTTSFSSNESPISQANNNNLSRFNNHSPEENNNSPLSGSSATNTNETELSLMLKDLETAMMEPDVDNSYNN 30 40 50 60 70 80 90 100 110 120 210 220 230 240 250 260 270 280 290 300 AT1G50 QGGFGQQHGVVSSAMYRSMEMISRGDLKGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPTGPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 QGGFGQQHGVVSSAMYRSMEMISRGDLKGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPTGPEL 130 140 150 160 170 180 190 200 210 220 310 320 330 340 350 360 370 380 390 400 AT1G50 LTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 LTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVP 230 240 250 260 270 280 290 300 310 320 410 420 430 440 450 460 470 480 490 500 AT1G50 FEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 FEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLA 330 340 350 360 370 380 390 400 410 420 510 520 530 540 550 560 570 580 590 AT1G50 RDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEERDGALYLGWKNQPLITSCAWR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_088 RDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 430 440 450 460 470 480 490 500 510 520

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