Code name | RE_0893 | |||
---|---|---|---|---|
Locus | AT2G01570 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
comment | 0311_アミノ酸配列100%一致 | |||
sequence |
>RE_0893_1761bp ATGAAGAGAGATCATCACCAATTCCAAGGTCGATTGTCCAACCACGGGACTTCTTCTTCATCATCATCAATCTCTAAAGATAAGATGATGATGGTGAAAA AAGAAGAAGACGGTGGAGGTAACATGGACGACGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGGCGGAGGTTGCTTTGAAACTCGA ACAATTAGAGACGATGATGAGTAATGTTCAAGAAGATGGTTTATCTCATCTCGCGACGGATACTGTTCATTATAATCCGTCGGAGCTTTATTCTTGGCTT GATAATATGCTCTCTGAGCTTAATCCTCCTCCTCTTCCGGCGAGTTCTAACGGTTTAGATCCGGTTCTTCCTTCGCCGGAGATTTGTGGTTTTCCGGCTT CGGATTATGACCTTAAAGTCATTCCCGGAAACGCGATTTATCAGTTTCCGGCGATTGATTCTTCGTCTTCGTCGAATAATCAGAACAAGCGTTTGAAATC ATGCTCGAGTCCTGATTCTATGGTTACATCGACTTCGACGGGTACGCAGATTGGTGGAGTCATAGGAACGACGGTGACGACAACCACCACGACAACGACG GCGGCGGGTGAGTCAACTCGTTCTGTTATCCTGGTTGACTCGCAAGAGAACGGTGTTCGTTTAGTCCACGCGCTTATGGCTTGTGCAGAAGCAATCCAGC AGAACAATTTGACTCTGGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCTCAAGCCGGAGCTATGAGAAAAGTGGCTACTTACTTCGCCGA AGCTTTAGCGCGGCGGATCTACCGTCTCTCTCCGCCGCAGAATCAGATCGATCATTGTCTCTCCGATACTCTTCAGATGCACTTTTACGAGACTTGTCCT TATCTTAAATTCGCTCACTTCACGGCGAACCAAGCGATTCTCGAAGCTTTTGAAGGTAAGAAGAGAGTACACGTCATTGATTTCTCGATGAACCAAGGTC TTCAATGGCCTGCACTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCACCGGCGCCGGATAATTCTGA TCATCTTCATGAAGTTGGTTGTAAATTAGCTCAGCTTGCGGAGGCGATTCACGTAGAATTCGAATACCGTGGATTCGTTGCTAACAGCTTAGCCGATCTC GATGCTTCGATGCTTGAGCTTAGACCGAGCGATACGGAAGCTGTTGCGGTGAACTCTGTTTTTGAGCTACATAAGCTCTTAGGTCGTCCCGGTGGGATAG AGAAAGTTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACCGGTTTTCTTAGACCGGTTTAC TGAATCGTTACATTATTATTCGACTCTGTTTGATTCGTTGGAAGGAGTTCCGAATAGTCAAGACAAAGTCATGTCTGAAGTTTACTTAGGGAAACAGATT TGTAATCTGGTGGCTTGTGAAGGTCCTGACAGAGTCGAGAGACACGAAACGTTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTAGCGCCGGCAC ATCTTGGGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCTGTGTTTAATAGTGGCCAAGGTTATCGTGTGGAGGAGAGTAATGGATGTTTGATGTT GGGTTGGCACACTCGTCCACTCATTACCACCTCCGCTTGGAAACTCTCGACGGCGGCGTAC >RE_0893_translated MKRDHHQFQGRLSNHGTSSSSSSISKDKMMMVKKEEDGGGNMDDELLAVLGYKVRSSEMAEVALKLEQLETMMSNVQEDGLSHLATDTVHYNPSELYSWL DNMLSELNPPPLPASSNGLDPVLPSPEICGFPASDYDLKVIPGNAIYQFPAIDSSSSSNNQNKRLKSCSSPDSMVTSTSTGTQIGGVIGTTVTTTTTTTT AAGESTRSVILVDSQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRLSPPQNQIDHCLSDTLQMHFYETCP YLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADL DASMLELRPSDTEAVAVNSVFELHKLLGRPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQDKVMSEVYLGKQI CNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLSTAAY |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1760/1761 (99.9%)(アミノ酸配列で100%)一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G01 ATGAAGAGAGATCATCACCAATTCCAAGGTCGATTGTCCAACCACGGGACTTCTTCTTCATCATCATCAATCTCTAAAGATAAGATGATGATGGTGAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGAAGAGAGATCATCACCAATTCCAAGGTCGATTGTCCAACCACGGGACTTCTTCTTCATCATCATCAATCTCTAAAGATAAGATGATGATGGTGAAAA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G01 AAGAAGAAGACGGTGGAGGTAACATGGACGACGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGGCGGAGGTTGCTTTGAAACTCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AAGAAGAAGACGGTGGAGGTAACATGGACGACGAGCTTCTCGCTGTTTTAGGTTACAAAGTTAGGTCATCGGAGATGGCGGAGGTTGCTTTGAAACTCGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G01 ACAATTAGAGACGATGATGAGTAATGTTCAAGAAGATGGTTTATCTCATCTCGCGACGGATACTGTTCATTATAATCCGTCGGAGCTTTATTCTTGGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACAATTAGAGACGATGATGAGTAATGTTCAAGAAGATGGTTTATCTCATCTCGCGACGGATACTGTTCATTATAATCCGTCGGAGCTTTATTCTTGGCTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G01 GATAATATGCTCTCTGAGCTTAATCCTCCTCCTCTTCCGGCGAGTTCTAACGGTTTAGATCCGGTTCTTCCTTCGCCGGAGATTTGTGGTTTTCCGGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GATAATATGCTCTCTGAGCTTAATCCTCCTCCTCTTCCGGCGAGTTCTAACGGTTTAGATCCGGTTCTTCCTTCGCCGGAGATTTGTGGTTTTCCGGCTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G01 CGGATTATGACCTTAAAGTCATTCCCGGAAACGCGATTTATCAGTTTCCGGCGATTGATTCTTCGTCTTCGTCGAATAATCAGAACAAGCGTTTGAAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CGGATTATGACCTTAAAGTCATTCCCGGAAACGCGATTTATCAGTTTCCGGCGATTGATTCTTCGTCTTCGTCGAATAATCAGAACAAGCGTTTGAAATC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G01 ATGCTCGAGTCCTGATTCTATGGTTACATCGACTTCGACGGGTACGCAGATTGGTGGAGTCATAGGAACGACGGTGACGACAACCACCACGACAACGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGCTCGAGTCCTGATTCTATGGTTACATCGACTTCGACGGGTACGCAGATTGGTGGAGTCATAGGAACGACGGTGACGACAACCACCACGACAACGACG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G01 GCGGCGGGTGAGTCAACTCGTTCTGTTATCCTGGTTGACTCGCAAGAGAACGGTGTTCGTTTAGTCCACGCGCTTATGGCTTGTGCAGAAGCAATCCAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GCGGCGGGTGAGTCAACTCGTTCTGTTATCCTGGTTGACTCGCAAGAGAACGGTGTTCGTTTAGTCCACGCGCTTATGGCTTGTGCAGAAGCAATCCAGC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G01 AGAACAATTTGACTCTAGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCTCAAGCCGGAGCTATGAGAAAAGTGGCTACTTACTTCGCCGA :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGAACAATTTGACTCTGGCGGAAGCTCTTGTGAAGCAAATCGGATGCTTAGCTGTGTCTCAAGCCGGAGCTATGAGAAAAGTGGCTACTTACTTCGCCGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G01 AGCTTTAGCGCGGCGGATCTACCGTCTCTCTCCGCCGCAGAATCAGATCGATCATTGTCTCTCCGATACTCTTCAGATGCACTTTTACGAGACTTGTCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGCTTTAGCGCGGCGGATCTACCGTCTCTCTCCGCCGCAGAATCAGATCGATCATTGTCTCTCCGATACTCTTCAGATGCACTTTTACGAGACTTGTCCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G01 TATCTTAAATTCGCTCACTTCACGGCGAACCAAGCGATTCTCGAAGCTTTTGAAGGTAAGAAGAGAGTACACGTCATTGATTTCTCGATGAACCAAGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TATCTTAAATTCGCTCACTTCACGGCGAACCAAGCGATTCTCGAAGCTTTTGAAGGTAAGAAGAGAGTACACGTCATTGATTTCTCGATGAACCAAGGTC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G01 TTCAATGGCCTGCACTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCACCGGCGCCGGATAATTCTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TTCAATGGCCTGCACTTATGCAAGCTCTTGCGCTTCGAGAAGGAGGTCCTCCAACTTTCCGGTTAACCGGAATTGGTCCACCGGCGCCGGATAATTCTGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G01 TCATCTTCATGAAGTTGGTTGTAAATTAGCTCAGCTTGCGGAGGCGATTCACGTAGAATTCGAATACCGTGGATTCGTTGCTAACAGCTTAGCCGATCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TCATCTTCATGAAGTTGGTTGTAAATTAGCTCAGCTTGCGGAGGCGATTCACGTAGAATTCGAATACCGTGGATTCGTTGCTAACAGCTTAGCCGATCTC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G01 GATGCTTCGATGCTTGAGCTTAGACCGAGCGATACGGAAGCTGTTGCGGTGAACTCTGTTTTTGAGCTACATAAGCTCTTAGGTCGTCCCGGTGGGATAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GATGCTTCGATGCTTGAGCTTAGACCGAGCGATACGGAAGCTGTTGCGGTGAACTCTGTTTTTGAGCTACATAAGCTCTTAGGTCGTCCCGGTGGGATAG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G01 AGAAAGTTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACCGGTTTTCTTAGACCGGTTTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGAAAGTTCTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCGAACCATAACGGACCGGTTTTCTTAGACCGGTTTAC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G01 TGAATCGTTACATTATTATTCGACTCTGTTTGATTCGTTGGAAGGAGTTCCGAATAGTCAAGACAAAGTCATGTCTGAAGTTTACTTAGGGAAACAGATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TGAATCGTTACATTATTATTCGACTCTGTTTGATTCGTTGGAAGGAGTTCCGAATAGTCAAGACAAAGTCATGTCTGAAGTTTACTTAGGGAAACAGATT 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G01 TGTAATCTGGTGGCTTGTGAAGGTCCTGACAGAGTCGAGAGACACGAAACGTTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTAGCGCCGGCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TGTAATCTGGTGGCTTGTGAAGGTCCTGACAGAGTCGAGAGACACGAAACGTTGAGTCAATGGGGAAACCGGTTTGGTTCGTCCGGTTTAGCGCCGGCAC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G01 ATCTTGGGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCTGTGTTTAATAGTGGCCAAGGTTATCGTGTGGAGGAGAGTAATGGATGTTTGATGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATCTTGGGTCTAACGCGTTTAAGCAAGCGAGTATGCTTTTGTCTGTGTTTAATAGTGGCCAAGGTTATCGTGTGGAGGAGAGTAATGGATGTTTGATGTT 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 AT2G01 GGGTTGGCACACTCGTCCACTCATTACCACCTCCGCTTGGAAACTCTCGACGGCGGCGTAC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GGGTTGGCACACTCGTCCACTCATTACCACCTCCGCTTGGAAACTCTCGACGGCGGCGTAC 1710 1720 1730 1740 1750 1760 10 20 30 40 50 60 70 80 90 100 AT2G01 MKRDHHQFQGRLSNHGTSSSSSSISKDKMMMVKKEEDGGGNMDDELLAVLGYKVRSSEMAEVALKLEQLETMMSNVQEDGLSHLATDTVHYNPSELYSWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 MKRDHHQFQGRLSNHGTSSSSSSISKDKMMMVKKEEDGGGNMDDELLAVLGYKVRSSEMAEVALKLEQLETMMSNVQEDGLSHLATDTVHYNPSELYSWL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G01 DNMLSELNPPPLPASSNGLDPVLPSPEICGFPASDYDLKVIPGNAIYQFPAIDSSSSSNNQNKRLKSCSSPDSMVTSTSTGTQIGGVIGTTVTTTTTTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 DNMLSELNPPPLPASSNGLDPVLPSPEICGFPASDYDLKVIPGNAIYQFPAIDSSSSSNNQNKRLKSCSSPDSMVTSTSTGTQIGGVIGTTVTTTTTTTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G01 AAGESTRSVILVDSQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRLSPPQNQIDHCLSDTLQMHFYETCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AAGESTRSVILVDSQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYRLSPPQNQIDHCLSDTLQMHFYETCP 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G01 YLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 YLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADL 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G01 DASMLELRPSDTEAVAVNSVFELHKLLGRPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQDKVMSEVYLGKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 DASMLELRPSDTEAVAVNSVFELHKLLGRPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQDKVMSEVYLGKQI 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 AT2G01 CNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLSTAAY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLSTAAY 510 520 530 540 550 560 570 580 |