Code name | RE_0894 | |||
---|---|---|---|---|
Locus | AT2G04890 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
comment | 0420_アミノ酸配列70%以上一致 | |||
sequence |
>RE_0894_1239bp ATGGACAATGTAAGAGGTTCAATAATGTTGCAGCCACTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATGAACTCTCCATGTGGCCTGATG ATGCTAAAGATTTGTTATTGATAGTGGAGGCAATATCAAGGGGAGACTTGAAGTTGGTACTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTCT AATGGCACGATGGTGTATGGGTGAGTTGCGCGGTATGGTTTCGATTTCTGGTGAGCCAATCCAGAGATTGGGAGCTTATATGTTAGAAGGGCTTGTTGCT AGGCTTGCTGCTTCTGGTAGTTCGATATATAAGTCTCTCCCGTCCAGAGAACCAGAGAGTTATGAATTTTTATCTTATGTGTATGTTCTGCATGAGGTTT GTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTGCGATTGCAGAAGCAATGAATGATGAAGAGAGGATTCACATTATTGACTTCCAAATTGGACA AGGGAGCCAGTGGATAGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAAATATTCGAATTACCGGAGTTGGTGATGGATCTGTCTTGGTT ACAGTCAAGAAGAGACTAGAGAAACTTGCAAAGAAGTTTGATGTTCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTTGTGAAGTTGAAGTGGAAAATC TTGATGTCCGAGATGGCGAAGCCCTTGGAGTGAACTTTGCTTACATGCTGCATCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGTT GCTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCAACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACA TTAAGTTATTACACGGCAATGTTCGAATCTATCGATGTTATGCTTCCGAGAAATCACAAGGAAAGGATCAATATCGAGCAGCACTGCATGGCAAGGGATG TCGTCAACATCATAGCTTGTGAAGGAGCCGAGAGGATCGAAAGACACGAGCTTCTCGGGAAATGGAAGTCAAGGTTTTCCATGGCGGGTTTTGAGCCATA CCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACGGGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGT TGGATGGACCGAATCTTGGTCTCATCTTGTGCATGGAAG >RE_0894_translated MDNVRGSIMLQPLPEIAESIDDAICHELSMWPDDAKDLLLIVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVA RLAASGSSIYKSLPSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMNDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLV TVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLET LSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLG WMDRILVSSCAWK |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1237/1239 (99.8%)(アミノ酸配列で411/413 (99.5%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G04 ATGGACAATGTAAGAGGTTCAATAATGTTGCAGCCACTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATGAACTCTCCATGTGGCCTGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGGACAATGTAAGAGGTTCAATAATGTTGCAGCCACTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATGAACTCTCCATGTGGCCTGATG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G04 ATGCTAAAGATTTGTTATTGATAGTGGAGGCAATATCAAGGGGAGACTTGAAGTTGGTACTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGCTAAAGATTTGTTATTGATAGTGGAGGCAATATCAAGGGGAGACTTGAAGTTGGTACTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G04 AATGGCACGATGGTGTATGGGTGAGTTGCGCGGTATGGTTTCGATTTCTGGTGAGCCAATCCAGAGATTGGGAGCTTATATGTTAGAAGGGCTTGTTGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AATGGCACGATGGTGTATGGGTGAGTTGCGCGGTATGGTTTCGATTTCTGGTGAGCCAATCCAGAGATTGGGAGCTTATATGTTAGAAGGGCTTGTTGCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G04 AGGCTTGCTGCTTCTGGTAGTTCGATATATAAGTCTCTCCAGTCCAGAGAACCAGAGAGTTATGAATTTTTATCTTATGTGTATGTTCTGCATGAGGTTT :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGGCTTGCTGCTTCTGGTAGTTCGATATATAAGTCTCTCCCGTCCAGAGAACCAGAGAGTTATGAATTTTTATCTTATGTGTATGTTCTGCATGAGGTTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G04 GTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTGCGATTGCAGAAGCAATGAAGGATGAAGAGAGGATTCACATTATTGACTTCCAAATTGGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: RE_089 GTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTGCGATTGCAGAAGCAATGAATGATGAAGAGAGGATTCACATTATTGACTTCCAAATTGGACA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G04 AGGGAGCCAGTGGATAGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAAATATTCGAATTACCGGAGTTGGTGATGGATCTGTCTTGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGGGAGCCAGTGGATAGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAAATATTCGAATTACCGGAGTTGGTGATGGATCTGTCTTGGTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G04 ACAGTCAAGAAGAGACTAGAGAAACTTGCAAAGAAGTTTGATGTTCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTTGTGAAGTTGAAGTGGAAAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACAGTCAAGAAGAGACTAGAGAAACTTGCAAAGAAGTTTGATGTTCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTTGTGAAGTTGAAGTGGAAAATC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G04 TTGATGTCCGAGATGGCGAAGCCCTTGGAGTGAACTTTGCTTACATGCTGCATCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TTGATGTCCGAGATGGCGAAGCCCTTGGAGTGAACTTTGCTTACATGCTGCATCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGTT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G04 GCTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCAACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GCTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCAACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G04 TTAAGTTATTACACGGCAATGTTCGAATCTATCGATGTTATGCTTCCGAGAAATCACAAGGAAAGGATCAATATCGAGCAGCACTGCATGGCAAGGGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TTAAGTTATTACACGGCAATGTTCGAATCTATCGATGTTATGCTTCCGAGAAATCACAAGGAAAGGATCAATATCGAGCAGCACTGCATGGCAAGGGATG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G04 TCGTCAACATCATAGCTTGTGAAGGAGCCGAGAGGATCGAAAGACACGAGCTTCTCGGGAAATGGAAGTCAAGGTTTTCCATGGCGGGTTTTGAGCCATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TCGTCAACATCATAGCTTGTGAAGGAGCCGAGAGGATCGAAAGACACGAGCTTCTCGGGAAATGGAAGTCAAGGTTTTCCATGGCGGGTTTTGAGCCATA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G04 CCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACGGGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACGGGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 AT2G04 TGGATGGACCGAATCTTGGTCTCATCTTGTGCATGGAAG ::::::::::::::::::::::::::::::::::::::: RE_089 TGGATGGACCGAATCTTGGTCTCATCTTGTGCATGGAAG 1210 1220 1230 10 20 30 40 50 60 70 80 90 100 AT2G04 MDNVRGSIMLQPLPEIAESIDDAICHELSMWPDDAKDLLLIVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 MDNVRGSIMLQPLPEIAESIDDAICHELSMWPDDAKDLLLIVEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G04 RLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLV ::::::::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: RE_089 RLAASGSSIYKSLPSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMNDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGDGSVLV 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G04 TVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TVKKRLEKLAKKFDVPFRFNAVSRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLET 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G04 LSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 LSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLG 310 320 330 340 350 360 370 380 390 400 410 AT2G04 WMDRILVSSCAWK ::::::::::::: RE_089 WMDRILVSSCAWK 410 |