◆◆◆RE_0895 detail◆◆◆

Code name	RE_0895
Locus	AT2G45160
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0895_1920bp ATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTTTATCTTCTTCTTCTTTCTATTCAGATTCTCAGAAAATCTGGTCCAATCAAGACA AAACCGAAGCAAAACAAGAAGATCTTGGTTATGTTGTCGGTGGTTTTTTACCGGAGCCGACGTCTGTTCTCGACGCTCTAAGAAGTCCTAGTCCTCTCGC TTCTTATTCTTCTACCACCACCACGCTGTCTTCCTCTCACGGCGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTGATGATAACAATAAC AATAAATGTAGTCAGATGGGTTTGGATGATCTTGACGGTGTTCTCTCTGCTTCTTCTCCTGGTCAAGAGCAGAGTATCTTGAGACTTATCATGGACCCGG GTTCTGCCTTCGGTGTTTTCGACCCGGGTTTCGGATTCGGGTCTGGTTCCGGGCCTGTGTCTGCTCCGGTGAGTGATAATTCGAATCTTCTGTGTAACTT CCCGTTTCAAGAGATTACGAATCCAGCAGAAGCTTTGATCAATCCTTCAAATCATTGCCTGTTCTATAATCCTCCGTTATCTCCACCGGCTAAACGGTTT AATTCCGGATCTCTTCATCAACCCGTTTTCCCTTTATCGGATCCGGATCCGGGTCACGACCCGGTTCGTCGTCAACATCAGTTTCAGTTTCCGTTTTATC ACAACAACCAGCAACAACAATTCCCGTCGTCTTCTTCTTCCACGGCGGTGGCTATGGTTCCGGTTCCGTCGCCGGGAATGGCCGGCGATGACCAGTCAGT CATCATCGAGCAGCTGTTCAACGCGGCGGAGCTAATCGGAACCACCGGAAACAACAACGGCGACCACACCGTTCTCGCGCAAGGGATATTGGCGCGGCTC AATCACCATCTCAACACTAGTAGTAACCACAAGTCTCCGTTTCAAAGAGCAGCTTCTCACATCGCTGAAGCTCTCCTCTCACTCATCCACAACGAATCAT CACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGC GAATCAATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGATCCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATG CAAGAACTCGCTTCCGGAGTTGGAGGAAGAAGAAGAAACAGAGCATCGTCTCTGAAATTAACAGTCTTTGCTCCTCCACCTTCTACAGTCTCCGACGAGT TCGAGCTTCGTTTCACAGAGGAAAATCTCAAAACATTCGCCGGAGAAGTCAAGATTCCTTTCGAAATCGAGTTACTAAGCGTAGAGCTTCTTCTAAACCC AGCTTATTGGCCACTCTCTCTACGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTTAATCCTC CGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTC AATACCACACTTCTCTGCTTGAGTCTCTTGATGCTAATCAGAACCAGGACGATTCGAGTATCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTT GATGAAACGACACCGTTGGATTGAAAGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGACGAGTTTGAGTCAGATGGCGGAAGCT CAGGCGGAGTGTTTGTTGCAGAGAAATCCGGCGAGAGGGTTTCACGTTGAGAAAAGGCAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTTGTTA CTGTCTCTGCTTGGAAATGT >RE_0895_translated MPLSFERFQGEGVFGLSSSSFYSDSQKIWSNQDKTEAKQEDLGYVVGGFLPEPTSVLDALRSPSPLASYSSTTTTLSSSHGGGGTTVTNTTVTAGDDNNN NKCSQMGLDDLDGVLSASSPGQEQSILRLIMDPGSAFGVFDPGFGFGSGSGPVSAPVSDNSNLLCNFPFQEITNPAEALINPSNHCLFYNPPLSPPAKRF NSGSLHQPVFPLSDPDPGHDPVRRQHQFQFPFYHNNQQQQFPSSSSSTAVAMVPVPSPGMAGDDQSVIIEQLFNAAELIGTTGNNNGDHTVLAQGILARL NHHLNTSSNHKSPFQRAASHIAEALLSLIHNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCNESGFDRIHIIDFDVGYGGQWSSLM QELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNLPVNSVASGYLPLIL RFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDSSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPTSLSQMAEA QAECLLQRNPARGFHVEKRQSSLVMCWQRKELVTVSAWKC
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1918/1920 (99.9%)（アミノ酸配列で638/640 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G45 ATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTTTATCTTCTTCTTCTTTCTATTCAGATTCTCAGAAAATCTGGTCCAATCAAGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTTTATCTTCTTCTTCTTTCTATTCAGATTCTCAGAAAATCTGGTCCAATCAAGACA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G45 AAACCGAAGCAAAACAAGAAGATCTTGGTTATGTTGTCGGTGGTTTTTTACCGGAGCCGACGTCTGTTCTCGACGCTCTAAGAAGTCCTAGTCCTCTCGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AAACCGAAGCAAAACAAGAAGATCTTGGTTATGTTGTCGGTGGTTTTTTACCGGAGCCGACGTCTGTTCTCGACGCTCTAAGAAGTCCTAGTCCTCTCGC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G45 TTCTTATTCTTCTACCACCACCACGCTGTCTTCCTCTCACGGCGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTGATGATAACAATAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TTCTTATTCTTCTACCACCACCACGCTGTCTTCCTCTCACGGCGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTGATGATAACAATAAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G45 AATAAATGTAGTCAGATGGGTTTGGATGATCTTGACGGTGTTCTCTCTGCTTCTTCTCCTGGTCAAGAGCAGAGTATCTTGAGACTTATCATGGACCCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AATAAATGTAGTCAGATGGGTTTGGATGATCTTGACGGTGTTCTCTCTGCTTCTTCTCCTGGTCAAGAGCAGAGTATCTTGAGACTTATCATGGACCCGG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G45 GTTCTGCCTTCGGTGTTTTCGACCCGGGTTTCGGATTCGGGTCTGGTTCCGGGCCTGTGTCTGCTCCGGTGAGTGATAATTCGAATCTTCTGTGTAACTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GTTCTGCCTTCGGTGTTTTCGACCCGGGTTTCGGATTCGGGTCTGGTTCCGGGCCTGTGTCTGCTCCGGTGAGTGATAATTCGAATCTTCTGTGTAACTT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G45 CCCGTTTCAAGAGATTACGAATCCAGCAGAAGCTTTGATCAATCCTTCAAATCATTGCCTGTTCTATAATCCTCCGTTATCTCCACCGGCTAAACGGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CCCGTTTCAAGAGATTACGAATCCAGCAGAAGCTTTGATCAATCCTTCAAATCATTGCCTGTTCTATAATCCTCCGTTATCTCCACCGGCTAAACGGTTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G45 AATTCCGGATCTCTTCATCAACCCGTTTTCCCTTTATCGGATCCGGATCCGGGTCACGACCCGGTTCGTCGTCAACATCAGTTTCAGTTTCCGTTTTATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AATTCCGGATCTCTTCATCAACCCGTTTTCCCTTTATCGGATCCGGATCCGGGTCACGACCCGGTTCGTCGTCAACATCAGTTTCAGTTTCCGTTTTATC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G45 ACAACAACCAGCAACAACAATTCCCGTCGTCTTCTTCTTCCACGGCGGTGGCTATGGTTCCGGTTCCGTCGCCGGGAATGGCCGGCGATGACCAGTCAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACAACAACCAGCAACAACAATTCCCGTCGTCTTCTTCTTCCACGGCGGTGGCTATGGTTCCGGTTCCGTCGCCGGGAATGGCCGGCGATGACCAGTCAGT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G45 CATCATCGAGCAGCTGTTCAACGCGGCGGAGCTAATCGGAACCACCGGAAACAACAACGGCGACCACACCGTTCTCGCGCAAGGGATATTGGCGCGGCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CATCATCGAGCAGCTGTTCAACGCGGCGGAGCTAATCGGAACCACCGGAAACAACAACGGCGACCACACCGTTCTCGCGCAAGGGATATTGGCGCGGCTC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G45 AATCACCATCTCAACACTAGTAGTAACCACAAGTCTCCGTTTCAAAGAGCAGCTTCTCACATCGCTGAAGCTCTCCTCTCACTCATCCACAACGAATCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AATCACCATCTCAACACTAGTAGTAACCACAAGTCTCCGTTTCAAAGAGCAGCTTCTCACATCGCTGAAGCTCTCCTCTCACTCATCCACAACGAATCAT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G45 CACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G45 GAATCAATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGATCCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GAATCAATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGATCCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G45 CAAGAACTCGCTTCCGGAGTTGGAGGAAGAAGAAGAAACAGAGCATCGTCTCTGAAATTAACAGTCTTTGCTCCTCCACCTTCTACAGTCTCCGACGAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CAAGAACTCGCTTCCGGAGTTGGAGGAAGAAGAAGAAACAGAGCATCGTCTCTGAAATTAACAGTCTTTGCTCCTCCACCTTCTACAGTCTCCGACGAGT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G45 TCGAGCTTCGTTTCACAGAGGAAAATCTCAAAACATTCGCCGGAGAAGTCAAGATTCCTTTCGAAATCGAGTTACTAAGCGTAGAGCTTCTTCTAAACCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TCGAGCTTCGTTTCACAGAGGAAAATCTCAAAACATTCGCCGGAGAAGTCAAGATTCCTTTCGAAATCGAGTTACTAAGCGTAGAGCTTCTTCTAAACCC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G45 AGCTTATTGGCCACTCTCTCTACGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTTAATCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGCTTATTGGCCACTCTCTCTACGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTTAATCCTC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G45 CGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G45 AATACCACACTTCTCTGCTTGAGTCTCTTGATGCTAATCAGAACCAGGACGATTCGAGTATCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AATACCACACTTCTCTGCTTGAGTCTCTTGATGCTAATCAGAACCAGGACGATTCGAGTATCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTT 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G45 GATGAAACGACACCGTTGGATTGAAAGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCGAGTTTGAGTCAGATGGCGGAAGCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_089 GATGAAACGACACCGTTGGATTGAAAGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGACGAGTTTGAGTCAGATGGCGGAAGCT 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 AT2G45 CAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGAGGGTTTCACGTTGAGAAAAGGCAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTTGTTA ::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CAGGCGGAGTGTTTGTTGCAGAGAAATCCGGCGAGAGGGTTTCACGTTGAGAAAAGGCAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTTGTTA 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 AT2G45 CTGTCTCTGCTTGGAAATGT :::::::::::::::::::: RE_089 CTGTCTCTGCTTGGAAATGT 1910 1920 10 20 30 40 50 60 70 80 90 100 AT2G45 MPLSFERFQGEGVFGLSSSSFYSDSQKIWSNQDKTEAKQEDLGYVVGGFLPEPTSVLDALRSPSPLASYSSTTTTLSSSHGGGGTTVTNTTVTAGDDNNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 MPLSFERFQGEGVFGLSSSSFYSDSQKIWSNQDKTEAKQEDLGYVVGGFLPEPTSVLDALRSPSPLASYSSTTTTLSSSHGGGGTTVTNTTVTAGDDNNN 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G45 NKCSQMGLDDLDGVLSASSPGQEQSILRLIMDPGSAFGVFDPGFGFGSGSGPVSAPVSDNSNLLCNFPFQEITNPAEALINPSNHCLFYNPPLSPPAKRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 NKCSQMGLDDLDGVLSASSPGQEQSILRLIMDPGSAFGVFDPGFGFGSGSGPVSAPVSDNSNLLCNFPFQEITNPAEALINPSNHCLFYNPPLSPPAKRF 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G45 NSGSLHQPVFPLSDPDPGHDPVRRQHQFQFPFYHNNQQQQFPSSSSSTAVAMVPVPSPGMAGDDQSVIIEQLFNAAELIGTTGNNNGDHTVLAQGILARL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 NSGSLHQPVFPLSDPDPGHDPVRRQHQFQFPFYHNNQQQQFPSSSSSTAVAMVPVPSPGMAGDDQSVIIEQLFNAAELIGTTGNNNGDHTVLAQGILARL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G45 NHHLNTSSNHKSPFQRAASHIAEALLSLIHNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCNESGFDRIHIIDFDVGYGGQWSSLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 NHHLNTSSNHKSPFQRAASHIAEALLSLIHNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCNESGFDRIHIIDFDVGYGGQWSSLM 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G45 QELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNLPVNSVASGYLPLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 QELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEENLKTFAGEVKIPFEIELLSVELLLNPAYWPLSLRSSEKEAIAVNLPVNSVASGYLPLIL 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G45 RFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDSSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_089 RFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDSSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPTSLSQMAEA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 AT2G45 QAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC :::::::::: ::::::::::::::::::::::::::::: RE_089 QAECLLQRNPARGFHVEKRQSSLVMCWQRKELVTVSAWKC 610 620 630 640

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