◆◆◆RE_0896 detail◆◆◆

Code name	RE_0896
Locus	AT3G03450
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0520_20080115_0896_FRW1W2_5555, AT3G03450.2_by_RIKE読まれた配列に有N
sequence	>RE_0896_1641bp ATGAAGAGAGGATACGGAGAAACATGGGATCCGCCACCAAAACCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTG ATGATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTTCGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGA ACAACTTGAGATGGTCTTGTCTAATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTCTCTAACTGGGTCGAGAGC ATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGACACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTCAGAGCAATTCCGGGTCTTT CTGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACTCGGATCGTGGTGCGAATCGTCGGACGAGTCAACTCGGTC CGTGGTGCTCGTTGACTCTCAGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGGAGAATCTCAACTTAGCTGAC GCGCTGGTGAAACGCGTTGGAACACTCGCGGGTTCTCAAGCTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTTTGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTT CGCTCATTTCACGGCGAACCAAGCGATTCTAGAAGCTGTTACGACGGCCCGTAGAGTTCACGTCATTGATTTAGGGCTTAATCAAGGGATGCAATGGCCT GCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTCCGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAGTTCAAAGGCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAAT GTTCGAAACCCGACCCGAATCTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTTCAATCGAAAAGCTTCTCAAT ACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTGAGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAGTTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGT TGTTGCGGCGGAAGGGTCCGATCGGGTCGAGCGGCACGAGACGGCTGCACAGTGGAGGATTCGGATGAAATCCGCTGGGTTTGACCCGATTCATCTCGGA TCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTTTACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGGC AGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC >RE_0896_translated MKRGYGETWDPPPKPLPASRSGEGPSMADKKKADDDNNNSNMDDELLAVLGYKVRSSEMAEVAQKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVES MLSELNNPASSDLDTTRSCVDRSEYDLRAIPGLSAFPKEEEVFDEEASSKRIRLGSWCESSDESTRSVVLVDSQETGVRLVHALVACAEAIHQENLNLAD ALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWP ALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIEKLLN TVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLG SSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWKLA
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1638/1641 (99.8%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G03 ATGAAGAGAGGATACGGAGAAACATGGGATCCGCCACCAAAACCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGAAGAGAGGATACGGAGAAACATGGGATCCGCCACCAAAACCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G03 ATGATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTTCGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTTCGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G03 ACAACTTGAGATGGTCTTGTCTAATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTCTCTAACTGGGTCGAGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACAACTTGAGATGGTCTTGTCTAATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTCTCTAACTGGGTCGAGAGC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G03 ATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGACACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTCAGAGCAATTCCGGGTCTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGACACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTCAGAGCAATTCCGGGTCTTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G03 CTGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACTCGGATCGTGGTGCGAATCGTCGGACGAGTCAACTCGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CTGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACTCGGATCGTGGTGCGAATCGTCGGACGAGTCAACTCGGTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G03 CGTGGTGCTCGTTGACTCTCAGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGGAGAATCTCAACTTAGCTGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CGTGGTGCTCGTTGACTCTCAGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGGAGAATCTCAACTTAGCTGAC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G03 GCGCTGGTGAAACGCGTGGGAACACTCGCGGGTTCTCAAGCTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GCGCTGGTGAAACGCGTTGGAACACTCGCGGGTTCTCAAGCTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G03 GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTTTGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTTTGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G03 CGCTCATTTCACGGCGAACCAAGCGATTCTAGAAGCTGTTACGACGGCGCGTAGAGTTCACGTCATTGATTTAGGGCTTAATCAAGGGATGCAATGGCCT :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CGCTCATTTCACGGCGAACCAAGCGATTCTAGAAGCTGTTACGACGGCCCGTAGAGTTCACGTCATTGATTTAGGGCTTAATCAAGGGATGCAATGGCCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G03 GCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTCCGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTCCGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G03 AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAATTCAAAGGCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAGTTCAAAGGCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAAT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G03 GTTCGAAACCCGACCCGAATCTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTTCAATCGAAAAGCTTCTCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GTTCGAAACCCGACCCGAATCTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTTCAATCGAAAAGCTTCTCAAT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G03 ACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTGAGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTGAGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT3G03 ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAGTTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAGTTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGT 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT3G03 TGTTGCGGCGGAAGGGTCCGATCGGGTCGAGCGGCACGAGACGGCTGCACAGTGGAGGATTCGGATGAAATCCGCTGGGTTTGACCCGATTCATCTCGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TGTTGCGGCGGAAGGGTCCGATCGGGTCGAGCGGCACGAGACGGCTGCACAGTGGAGGATTCGGATGAAATCCGCTGGGTTTGACCCGATTCATCTCGGA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT3G03 TCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTTTACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTTTACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGGC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 AT3G03 AGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC ::::::::::::::::::::::::::::::::::::::::: RE_089 AGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC 1610 1620 1630 1640 10 20 30 40 50 60 70 80 90 100 AT3G03 MKRGYGETWDPPPKPLPASRSGEGPSMADKKKADDDNNNSNMDDELLAVLGYKVRSSEMAEVAQKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 MKRGYGETWDPPPKPLPASRSGEGPSMADKKKADDDNNNSNMDDELLAVLGYKVRSSEMAEVAQKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVES 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G03 MLSELNNPASSDLDTTRSCVDRSEYDLRAIPGLSAFPKEEEVFDEEASSKRIRLGSWCESSDESTRSVVLVDSQETGVRLVHALVACAEAIHQENLNLAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 MLSELNNPASSDLDTTRSCVDRSEYDLRAIPGLSAFPKEEEVFDEEASSKRIRLGSWCESSDESTRSVVLVDSQETGVRLVHALVACAEAIHQENLNLAD 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G03 ALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWP 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G03 ALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIEKLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIEKLLN 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G03 TVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 AT3G03 SSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWKLA ::::::::::::::::::::::::::::::::::::::::::::::: RE_089 SSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWKLA 510 520 530 540

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