◆◆◆RE_0898 detail◆◆◆

Code name	RE_0898
Locus	AT3G46600
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0898_1749bp ATGGATGCTATTTTGCCAGTACCCGTTGATGGGTTCAGATTCGACACCGGTTCTGGATCTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCA ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTAAGGTATGTTCAGATTACCTTCCTGTCTTTAAGTACATCAA TGACATGTTGATGGAAGAAGATCTTGAAGGTCAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCAGAGAGATCTTTCTTCGAAGTGCTTCAA GATCAAACTCCAATCTCGGGTGATCTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTTTCAGAGGAGTCAACCA GAAGGTATCGACATAGGGATGATGATGAAGATGATGATCTTGAGAGTGGAAGGAAATCGAAGCTCCCTGCGATTTCTACGGTGGATGAGTTAGCAGAGAA GTTTGAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACAAGACACGTAAAAGGCTCATCGAATCGATACAAGCAG CAAAAGTCAGATCAGCCAGTAAATATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGAGCTTTTGAGAAACTGAAGG AGATAAGAGAACACTCTTCTCGCCACGGTGATGCGACTCAAAGACTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACTAC ACCAATATCTGCTACTTCTAGCAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGATTTGTTCAGGCTTGCCCCACCTTAATAATGTGTTATTTC ACTGCAAACAGAACAATCAATGAGCTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATTCTCTATGGATTTCAATGGCCTTGTCTGATAC AAGCTTTGTCAAAACGTGACATCGGACCACCACTGCTCCGTGTGACTGGTATCGAGCTTCCTCAGTCAGGTTTCCGTCCATCAGAGCGGGTAGAAGAGAC CGGGCGAAGACTAAAGAGGTTCTGTGACAAGTTCAATGTCCCGTTTGAGTACAGTTTCATAGCCAAGAATTGGGAGAACATAACTCTTGATGATCTGGTG ATCAATAGTGGCGAGACAACAGTTGTCAACTGCATCCTCCGGCTACAATATACACCTGATGAAACCGTGTCCCTCAACTCACCGAGAGACACGGCTCTGA AACTATTCAGAGACATCAACCCTGACCTCTTTGTGTTTGCAGAGATTAACGGGACTTACAATTCACCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTCTT CCATTGCTCGTCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGACACTGGTGGAGAGGGAACTAATCATAAGAGATGCAATG AGTGTGATAGCCTGTGAAGGGTCTGAGCGGTTTGCAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGATTCTAAGAGCAGGATTTAGACCAGCGAAAC TAAGCAAACAGATAGTAAAGGACGGGGAAGAGATAGTGAAAGAACGTTACCACAAAGATTTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTG GAAAGGAAGAGTCCTTTATGCTGTTTCTTGCTGGAAACCTGCTAAGAAG >RE_0898_translated MDAILPVPVDGFRFDTGSGSCCKPRNNLESGTTNRFTCFNESESQSNPSPTESKVCSDYLPVFKYINDMLMEEDLEGQSCMLEDSLALQAAERSFFEVLQ DQTPISGDLEDGSLGNFSSITSLHQPEVSEESTRRYRHRDDDEDDDLESGRKSKLPAISTVDELAEKFEEVLLVCQKNDQGEATEKKTRHVKGSSNRYKQ QKSDQPVNMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYF TANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLV INSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAM SVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGEEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPAKK
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1747/1749 (99.9%)（アミノ酸配列で581/583 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G46 ATGGATGCTATTTTGCCAGTACCCGTTGATGGGTTCAGATTCGACACCGGTTCTGGATCTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATGGATGCTATTTTGCCAGTACCCGTTGATGGGTTCAGATTCGACACCGGTTCTGGATCTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G46 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTAAGGTATGTTCAGATTACCTTCCTGTCTTTAAGTACATCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTAAGGTATGTTCAGATTACCTTCCTGTCTTTAAGTACATCAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G46 TGACATGTTGATGGAAGAAGATCTTGAAGGTCAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCAGAGAGATCTTTCTTCGAAGTGCTTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TGACATGTTGATGGAAGAAGATCTTGAAGGTCAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCAGAGAGATCTTTCTTCGAAGTGCTTCAA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G46 GATCAAACTCCAATCTCGGGTGATCTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTTTCAGAGGAGTCAACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GATCAAACTCCAATCTCGGGTGATCTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTTTCAGAGGAGTCAACCA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G46 GAAGGTATCGACATAGGGATGATGATGAAGATGATGATCTTGAGAGTGGAAGGAAATCGAAGCTCCCTGCGATTTCTACGGTGGATGAGTTAGCAGAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GAAGGTATCGACATAGGGATGATGATGAAGATGATGATCTTGAGAGTGGAAGGAAATCGAAGCTCCCTGCGATTTCTACGGTGGATGAGTTAGCAGAGAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G46 GTTTGAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACAAGACACGTAAAAGGCTCATCGAATCGATACAAGCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GTTTGAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACAAGACACGTAAAAGGCTCATCGAATCGATACAAGCAG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G46 CAAAAGTCAGATCAGCCAGTAGATATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGAGCTTTTGAGAAACTGAAGG ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CAAAAGTCAGATCAGCCAGTAAATATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGAGCTTTTGAGAAACTGAAGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G46 AGATAAGAGAACACTCTTCTCGCCACGGTGATGCGACTCAAAGACTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGATAAGAGAACACTCTTCTCGCCACGGTGATGCGACTCAAAGACTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACTAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G46 ACCAATATCTGCTACTTCTAGCAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGATTTGTTCAGGCTTGCCCCACCTTAATAATGTGTTATTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACCAATATCTGCTACTTCTAGCAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGATTTGTTCAGGCTTGCCCCACCTTAATAATGTGTTATTTC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G46 ACTGCAAACAGAACAATCAATGAGCTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATTCTCTATGGATTTCAATGGCCTTGTCTGATAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ACTGCAAACAGAACAATCAATGAGCTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATTCTCTATGGATTTCAATGGCCTTGTCTGATAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G46 AAGCTTTGTCAAAACGTGACATCGGACCACCACTGCTCCGTGTGACTGGTATCGAGCTTCCTCAGTCAGGTTTCCGTCCATCAGAGCGGGTAGAAGAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AAGCTTTGTCAAAACGTGACATCGGACCACCACTGCTCCGTGTGACTGGTATCGAGCTTCCTCAGTCAGGTTTCCGTCCATCAGAGCGGGTAGAAGAGAC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G46 CGGGCGAAGACTAAAGAGGTTCTGTGACAAGTTCAATGTCCCGTTTGAGTACAGTTTCATAGCCAAGAATTGGGAGAACATAACTCTTGATGATCTGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CGGGCGAAGACTAAAGAGGTTCTGTGACAAGTTCAATGTCCCGTTTGAGTACAGTTTCATAGCCAAGAATTGGGAGAACATAACTCTTGATGATCTGGTG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G46 ATCAATAGTGGCGAGACAACAGTTGTCAACTGCATCCTCCGGCTACAATATACACCTGATGAAACCGTGTCCCTCAACTCACCGAGAGACACGGCTCTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 ATCAATAGTGGCGAGACAACAGTTGTCAACTGCATCCTCCGGCTACAATATACACCTGATGAAACCGTGTCCCTCAACTCACCGAGAGACACGGCTCTGA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT3G46 AACTATTCAGAGACATCAACCCTGACCTCTTTGTGTTTGCAGAGATTAACGGGACTTACAATTCACCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AACTATTCAGAGACATCAACCCTGACCTCTTTGTGTTTGCAGAGATTAACGGGACTTACAATTCACCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTCTT 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT3G46 CCATTGCTCGTCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGACACTGGTGGAGAGGGAACTAATCATAAGAGATGCAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 CCATTGCTCGTCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGACACTGGTGGAGAGGGAACTAATCATAAGAGATGCAATG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT3G46 AGTGTGATAGCCTGTGAAGGGTCTGAGCGGTTTGCAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGATTCTAAGAGCAGGATTTAGACCAGCGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 AGTGTGATAGCCTGTGAAGGGTCTGAGCGGTTTGCAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGATTCTAAGAGCAGGATTTAGACCAGCGAAAC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT3G46 TAAGCAAACAGATAGTAAAGGACGGGAAAGAGATAGTGAAAGAACGTTACCACAAAGATTTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTG :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TAAGCAAACAGATAGTAAAGGACGGGGAAGAGATAGTGAAAGAACGTTACCACAAAGATTTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTG 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 AT3G46 GAAAGGAAGAGTCCTTTATGCTGTTTCTTGCTGGAAACCTGCTAAGAAG ::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 GAAAGGAAGAGTCCTTTATGCTGTTTCTTGCTGGAAACCTGCTAAGAAG 1710 1720 1730 1740 10 20 30 40 50 60 70 80 90 100 AT3G46 MDAILPVPVDGFRFDTGSGSCCKPRNNLESGTTNRFTCFNESESQSNPSPTESKVCSDYLPVFKYINDMLMEEDLEGQSCMLEDSLALQAAERSFFEVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 MDAILPVPVDGFRFDTGSGSCCKPRNNLESGTTNRFTCFNESESQSNPSPTESKVCSDYLPVFKYINDMLMEEDLEGQSCMLEDSLALQAAERSFFEVLQ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G46 DQTPISGDLEDGSLGNFSSITSLHQPEVSEESTRRYRHRDDDEDDDLESGRKSKLPAISTVDELAEKFEEVLLVCQKNDQGEATEKKTRHVKGSSNRYKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 DQTPISGDLEDGSLGNFSSITSLHQPEVSEESTRRYRHRDDDEDDDLESGRKSKLPAISTVDELAEKFEEVLLVCQKNDQGEATEKKTRHVKGSSNRYKQ 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G46 QKSDQPVDMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYF :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 QKSDQPVNMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYF 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G46 TANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 TANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLV 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G46 INSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_089 INSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAM 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 AT3G46 SVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPAKK ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: RE_089 SVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGEEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPAKK 510 520 530 540 550 560 570 580

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