◆◆◆RE_0900 detail◆◆◆

Code name	RE_0900
Locus	AT3G54220
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0428_アミノ酸配列70%以上一致
sequence	>RE_0900_1959bp ATGGCGGAATCCGGCGATTTCAACGGTGGTCAACCTCCTCCTCATAGTCCTCTGAGAACAACTTCTTCCGGTAGTAGCAGCAGCAACAACCGTGGTCCTC CTCCTCCTCCTCCTCCTCCTTTAGTGATGGTGAGAAAAAGATTAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACTCCTCTCGTCCTCCTCGCCG TGTCTCTCACCTTCTTGACTCCCACTACAATACTGTCACACCACAACAACCACCGTCTCTTACGGCGGCGGCTACTGTATCTTCTCAACCAAACCCACCA CTCTCTGTTTGTGGCTTCTCTGGTCTTCCCGTTTTTCCTTCAGACCGTGGTGGTCGGAATGTTATGATGTCCGTACAACCAATGGATCAAGACTCTTCAT CTTCTTCTGCTTCACCTACTGTATGGGTTGACGCCATTATCAGAGACCTTATCCATTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAG AGACATTATCTTCCCTTGTAACCCAAATCTCGGTGCTCTTCTTGAATACAGGCTCCAATCTCTCATGCTCCTTGATCCTTCCTCTTCCTCTGACCCTTCT CCTCAAACTTTTGAACCTCTCTATCAGATCTCCAACAATCCTTCTCCTCCACAACAGCAACAGCAGCACCAACAACAACAACAACAGCATAAGCCTCCTC CTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCTACCGATGCACCACCGCAACCAGAGACAGTGACGGCCACTGTTCCCGCCGTCCAAACAAATAC GGCGGAGGCTTTAAGAGAGAGGAAGGAAGAGATTAAGAGGCAGAAGCAAGACGAAGAAGGATTACACCTTCTCACATTGCTGCTACAGTGTGCTGAAGCT GTCTCTGCTGATAATCTCGAAGAAGCAAACAAGCTTCTTCTTGAGATCTCTCAGTTATCAACTCCTTACGGGACCTCAGCGCAGAGAGTAGCTGCTTACT TCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCGGAATTTACGCGGCTTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAAATGGT CTCTGCGTTTCAGGTCTTTAATGGGATAAGCCCTTTAGTGAAATTCTCACACTTTACAGCGAATCAGGCGATTCAAGAAGCATTTGAGAAAGAAGACAGT GTACACATCATTGACTTGGACATCATGCAGGGACTTCAATGGCCTGGTTTATTCCACATTCTTGCTTCTAGACCTGGAGGACCTCCACACGTGCGACTCA CGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGAAACGTCTTTCGGATTTCGCAGATAAGCTTGGCCTGCCTTTTGAGTTCTGCCCTTTAGC TGAGAAAGTTGGAAACTTGGACACTGAGAGACTCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGC TCTGATGCACACACTCTCTGGTTACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATTTGAGCCACGCTGGTTCTTTCTTAGGAAGAT TTGTAGAAGCAATACATTACTACTCTGCACTCTTTGACTCACTGGGAGCAAGCTACGGCGAAGAGAGTGAAGAGAGACATGTCGTGGAACAGCGGCTATT ATCGAAAGAGATACGGAATGTATTAGCGGTTGGAGGACCATCGAGAAGCGGTGAAGTGAAGTTTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTT AAAGGTATATCTTTAGCTGGAAATGCAGCTACACAAGCGACTCTACTGTTGGGAATGTTTCCTTCGGATGGTTACACTTTGGTTGATGATAATGGTACAC TTAAGCTTGGATGGAAAGATCTTTCGTTACTCACTGCTTCAGCTTGGACGCCTCGTTCT >RE_0900_translated MAESGDFNGGQPPPHSPLRTTSSGSSSSNNRGPPPPPPPPLVMVRKRLASEMSSNPDYNNSSRPPRRVSHLLDSHYNTVTPQQPPSLTAAATVSSQPNPP LSVCGFSGLPVFPSDRGGRNVMMSVQPMDQDSSSSSASPTVWVDAIIRDLIHSSTSVSIPQLIQNVRDIIFPCNPNLGALLEYRLQSLMLLDPSSSSDPS PQTFEPLYQISNNPSPPQQQQQHQQQQQQHKPPPPPIQQQERENSSTDAPPQPETVTATVPAVQTNTAEALRERKEEIKRQKQDEEGLHLLTLLLQCAEA VSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDS VHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTG SDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQRLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGF KGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTPRS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1955/1959 (99.8%)（アミノ酸配列で650/653 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G54 ATGGCGGAATCCGGCGATTTCAACGGTGGTCAACCTCCTCCTCATAGTCCTCTGAGAACAACTTCTTCCGGTAGTAGCAGCAGCAACAACCGTGGTCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ATGGCGGAATCCGGCGATTTCAACGGTGGTCAACCTCCTCCTCATAGTCCTCTGAGAACAACTTCTTCCGGTAGTAGCAGCAGCAACAACCGTGGTCCTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G54 CTCCTCCTCCTCCTCCTCCTTTAGTGATGGTGAGAAAAAGATTAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACTCCTCTCGTCCTCCTCGCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTCCTCCTCCTCCTCCTCCTTTAGTGATGGTGAGAAAAAGATTAGCTTCCGAGATGTCTTCTAACCCTGACTACAACAACTCCTCTCGTCCTCCTCGCCG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G54 TGTCTCTCACCTTCTTGACTCCAACTACAATACTGTCACACCACAACAACCACCGTCTCTTACGGCGGCGGCTACTGTATCTTCTCAACCAAACCCACCA :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TGTCTCTCACCTTCTTGACTCCCACTACAATACTGTCACACCACAACAACCACCGTCTCTTACGGCGGCGGCTACTGTATCTTCTCAACCAAACCCACCA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G54 CTCTCTGTTTGTGGCTTCTCTGGTCTTCCCGTTTTTCCTTCAGACCGTGGTGGTCGGAATGTTATGATGTCCGTACAACCAATGGATCAAGACTCTTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTCTCTGTTTGTGGCTTCTCTGGTCTTCCCGTTTTTCCTTCAGACCGTGGTGGTCGGAATGTTATGATGTCCGTACAACCAATGGATCAAGACTCTTCAT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G54 CTTCTTCTGCTTCACCTACTGTATGGGTTGACGCCATTATCAGAGACCTTATCCATTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTTCTTCTGCTTCACCTACTGTATGGGTTGACGCCATTATCAGAGACCTTATCCATTCCTCAACTTCAGTCTCTATTCCTCAACTTATCCAAAACGTTAG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G54 AGACATTATCTTCCCTTGTAACCCAAATCTCGGTGCTCTTCTTGAATACAGGCTCCGATCTCTCATGCTCCTTGATCCTTCCTCTTCCTCTGACCCTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: RE_090 AGACATTATCTTCCCTTGTAACCCAAATCTCGGTGCTCTTCTTGAATACAGGCTCCAATCTCTCATGCTCCTTGATCCTTCCTCTTCCTCTGACCCTTCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G54 CCTCAAACTTTCGAACCTCTCTATCAGATCTCCAACAATCCTTCTCCTCCACAACAGCAACAGCAGCACCAACAACAACAACAACAGCATAAGCCTCCTC ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CCTCAAACTTTTGAACCTCTCTATCAGATCTCCAACAATCCTTCTCCTCCACAACAGCAACAGCAGCACCAACAACAACAACAACAGCATAAGCCTCCTC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G54 CTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCTACCGATGCACCACCGCAACCAGAGACAGTGACGGCCACTGTTCCCGCCGTCCAAACAAATAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTCCTCCGATTCAGCAGCAAGAAAGAGAAAATTCTTCTACCGATGCACCACCGCAACCAGAGACAGTGACGGCCACTGTTCCCGCCGTCCAAACAAATAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G54 GGCGGAGGCTTTAAGAGAGAGGAAGGAAGAGATTAAGAGGCAGAAGCAAGACGAAGAAGGATTACACCTTCTCACATTGCTGCTACAGTGTGCTGAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GGCGGAGGCTTTAAGAGAGAGGAAGGAAGAGATTAAGAGGCAGAAGCAAGACGAAGAAGGATTACACCTTCTCACATTGCTGCTACAGTGTGCTGAAGCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G54 GTCTCTGCTGATAATCTCGAAGAAGCAAACAAGCTTCTTCTTGAGATCTCTCAGTTATCAACTCCTTACGGGACCTCAGCGCAGAGAGTAGCTGCTTACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GTCTCTGCTGATAATCTCGAAGAAGCAAACAAGCTTCTTCTTGAGATCTCTCAGTTATCAACTCCTTACGGGACCTCAGCGCAGAGAGTAGCTGCTTACT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G54 TCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCGGAATTTACGCGGCTTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAAATGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCTCGGAAGCTATGTCAGCGAGATTACTCAACTCGTGTCTCGGAATTTACGCGGCTTTGCCTTCACGGTGGATGCCTCAAACGCATAGCTTGAAAATGGT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G54 CTCTGCGTTTCAGGTCTTTAATGGGATAAGCCCTTTAGTGAAATTCTCACACTTTACAGCGAATCAGGCGATTCAAGAAGCATTTGAGAAAGAAGACAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTCTGCGTTTCAGGTCTTTAATGGGATAAGCCCTTTAGTGAAATTCTCACACTTTACAGCGAATCAGGCGATTCAAGAAGCATTTGAGAAAGAAGACAGT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G54 GTACACATCATTGACTTGGACATCATGCAGGGACTTCAATGGCCTGGTTTATTCCACATTCTTGCTTCTAGACCTGGAGGACCTCCACACGTGCGACTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GTACACATCATTGACTTGGACATCATGCAGGGACTTCAATGGCCTGGTTTATTCCACATTCTTGCTTCTAGACCTGGAGGACCTCCACACGTGCGACTCA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT3G54 CGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGAAACGTCTTTCGGATTTCGCAGATAAGCTTGGCCTGCCTTTTGAGTTCTGCCCTTTAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CGGGACTTGGTACTTCCATGGAAGCTCTTCAGGCTACAGGGAAACGTCTTTCGGATTTCGCAGATAAGCTTGGCCTGCCTTTTGAGTTCTGCCCTTTAGC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT3G54 TGAGAAAGTTGGAAACTTGGACACTGAGAGACTCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TGAGAAAGTTGGAAACTTGGACACTGAGAGACTCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT3G54 TCTGATGCACACACTCTCTGGTTACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATTTGAGCCACGCTGGTTCTTTCTTAGGAAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCTGATGCACACACTCTCTGGTTACTCCAAAGATTAGCTCCTAAAGTTGTGACAGTAGTGGAACAAGATTTGAGCCACGCTGGTTCTTTCTTAGGAAGAT 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT3G54 TTGTAGAAGCAATACATTACTACTCTGCACTCTTTGACTCACTGGGAGCAAGCTACGGCGAAGAGAGTGAAGAGAGACATGTCGTGGAACAGCAGCTATT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: RE_090 TTGTAGAAGCAATACATTACTACTCTGCACTCTTTGACTCACTGGGAGCAAGCTACGGCGAAGAGAGTGAAGAGAGACATGTCGTGGAACAGCGGCTATT 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT3G54 ATCGAAAGAGATACGGAATGTATTAGCGGTTGGAGGACCATCGAGAAGCGGTGAAGTGAAGTTTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ATCGAAAGAGATACGGAATGTATTAGCGGTTGGAGGACCATCGAGAAGCGGTGAAGTGAAGTTTGAGAGCTGGAGGGAGAAAATGCAACAATGTGGGTTT 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 AT3G54 AAAGGTATATCTTTAGCTGGAAATGCAGCTACACAAGCGACTCTACTGTTGGGAATGTTTCCTTCGGATGGTTACACTTTGGTTGATGATAATGGTACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 AAAGGTATATCTTTAGCTGGAAATGCAGCTACACAAGCGACTCTACTGTTGGGAATGTTTCCTTCGGATGGTTACACTTTGGTTGATGATAATGGTACAC 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 AT3G54 TTAAGCTTGGATGGAAAGATCTTTCGTTACTCACTGCTTCAGCTTGGACGCCTCGTTCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TTAAGCTTGGATGGAAAGATCTTTCGTTACTCACTGCTTCAGCTTGGACGCCTCGTTCT 1910 1920 1930 1940 1950 10 20 30 40 50 60 70 80 90 100 AT3G54 MAESGDFNGGQPPPHSPLRTTSSGSSSSNNRGPPPPPPPPLVMVRKRLASEMSSNPDYNNSSRPPRRVSHLLDSNYNTVTPQQPPSLTAAATVSSQPNPP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: RE_090 MAESGDFNGGQPPPHSPLRTTSSGSSSSNNRGPPPPPPPPLVMVRKRLASEMSSNPDYNNSSRPPRRVSHLLDSHYNTVTPQQPPSLTAAATVSSQPNPP 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G54 LSVCGFSGLPVFPSDRGGRNVMMSVQPMDQDSSSSSASPTVWVDAIIRDLIHSSTSVSIPQLIQNVRDIIFPCNPNLGALLEYRLRSLMLLDPSSSSDPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: RE_090 LSVCGFSGLPVFPSDRGGRNVMMSVQPMDQDSSSSSASPTVWVDAIIRDLIHSSTSVSIPQLIQNVRDIIFPCNPNLGALLEYRLQSLMLLDPSSSSDPS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G54 PQTFEPLYQISNNPSPPQQQQQHQQQQQQHKPPPPPIQQQERENSSTDAPPQPETVTATVPAVQTNTAEALRERKEEIKRQKQDEEGLHLLTLLLQCAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 PQTFEPLYQISNNPSPPQQQQQHQQQQQQHKPPPPPIQQQERENSSTDAPPQPETVTATVPAVQTNTAEALRERKEEIKRQKQDEEGLHLLTLLLQCAEA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G54 VSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 VSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDS 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G54 VHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 VHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G54 SDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: RE_090 SDAHTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQRLLSKEIRNVLAVGGPSRSGEVKFESWREKMQQCGF 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 AT3G54 KGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTPRS ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 KGISLAGNAATQATLLLGMFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTPRS 610 620 630 640 650

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