◆◆◆RE_0902 detail◆◆◆

Code name	RE_0902
Locus	AT4G00150
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0902_1674bp ATGCCCTTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTCCCTTCCCCCAACCACCGTCGTCTCCGCTTTTGAGCC ACCGCAAAGCAAGAGGCGGCGAAGAAGAAGAGGAAGAAGTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACTCCCTCATAAGCCCAACCTCTTCCTCCAC GGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGCGGCAACGCCACCACCGATGAGCAATGCGGAGCCATTGGGTTGGGTGATTGGGAGGAG CAAGTTCCTCATGACCACGAACAGAGCATTCTCGGACTCATCATGGGAGATTCCACAGATCCCTCTCTTGAACTCAACAGCATTCTCCAAACATCTCCCA CCTTCCACGACTCTGACTACTCATCACCCGGTTTCGGAGTCGTCGACACCGGCTTCGGTTTAGACCACCACTCTGTTCCGCCGTCACATGTTTCCGGTCT TCTGATCAACCAAAGTCAAACCCACTACACACAGAATCCTGCGGCTATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCT GGTCCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGTCTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGC TCTCTTCTCCCGTCGGGAAGCCATTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAATAATCTCCTTCACAACGTCTCCCAAACCCTAAACCCTTA TTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAGATCTCTCCCGTTCTTCAGTTCGCCAACTTTACCTCCAACCAAGCCCTCTTAGAGTCC TTCCATGGCTTCCACCGTCTCCACATCATCGACTTCGATATCGGCTACGGTGGCCAATGGGCTTCCCTCATGCAAGAGCTTGTTCTCCGCGACAACGCCG CTCCTCTCTCCCTCAAGATCACCGTTTTCGCTTCTCCGGCGAACCACGACCAGCTCGAACTTGGCTTCACTCAAGACAACCTCAAGCACTTCGCCTCTGA GATCAACATCTCCCTTGACATCCAAGTTTTGAGCTTAGACCTCCTCGGCTCCATCTCGTGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATC TCCGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGACGATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGG ATCTGCCCCTCTCTCAACAGCTCGCCCACTCGCTGCACTCACACACCGCTCTCTTCGAATCCCTCGACGCCGTCAACGCCAACCTCGACGCAATGCAGAA GATCGAGAGGTTTCTTATACAGCCGGAGATAGAGAAGCTGGTGTTGGATCGTAGCCGTCCGATAGAAAGGCCGATGATGACGTGGCAAGCGATGTTTCTA CAGATGGGTTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAAGCCGAGTGTTTAGTCCAACGGACGCCAGTGAGAGGCTTTCACGTCGAGAAGA AACATAACTCACTTCTCCTATGTTGGCAAAGGACAGAACTCGTCGGAGTTTCAGCATGGAGATGTCGCTCCTCC >RE_0902_translated MPLPFEEFQGKGISCFSSFSSPFPQPPSSPLLSHRKARGGEEEEEEVPAAEPTSVLDSLISPTSSSTVSSSHGGNSAVGGGGNATTDEQCGAIGLGDWEE QVPHDHEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNPAAIFYGHHHHTPPPAKRLNP GPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNI SAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPLSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFL QMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRCRSS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1671/1674 (99.8%)（アミノ酸配列で555/558 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G00 ATGCCCTTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTTCCTTCCCCCAACCACCGTCGTCTCCGCTTTTGAGCC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: RE_090 ATGCCCTTACCCTTTGAAGAGTTTCAAGGGAAGGGGATTTCTTGTTTCTCTTCTTTCTCGTCTCCCTTCCCCCAACCACCGTCGTCTCCGCTTTTGAGCC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G00 ACCGCAAAGCAAGAGGCGGCGAAGAAGAAGAGGAAGAAGTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACTCCCTCATAAGCCCAACCTCTTCCTCCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ACCGCAAAGCAAGAGGCGGCGAAGAAGAAGAGGAAGAAGTTCCCGCGGCGGAGCCTACCTCTGTTCTGGACTCCCTCATAAGCCCAACCTCTTCCTCCAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G00 GGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGCGGCGACGCCACCACCGATGAGCAATGCGGAGCCATTGGGTTGGGTGATTGGGAGGAG :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GGTGTCTTCCTCTCACGGCGGAAACAGCGCCGTCGGAGGCGGCGGCAACGCCACCACCGATGAGCAATGCGGAGCCATTGGGTTGGGTGATTGGGAGGAG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G00 CAAGTTCCTCATGACCACGAACAGAGCATTCTCGGACTCATCATGGGAGATTCCACAGATCCCTCTCTTGAACTCAACAGCATTCTCCAAACATCTCCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CAAGTTCCTCATGACCACGAACAGAGCATTCTCGGACTCATCATGGGAGATTCCACAGATCCCTCTCTTGAACTCAACAGCATTCTCCAAACATCTCCCA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G00 CCTTCCACGACTCTGACTACTCATCACCCGGTTTCGGAGTCGTCGACACCGGCTTCGGTTTAGACCACCACTCTGTTCCGCCGTCACATGTTTCCGGTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CCTTCCACGACTCTGACTACTCATCACCCGGTTTCGGAGTCGTCGACACCGGCTTCGGTTTAGACCACCACTCTGTTCCGCCGTCACATGTTTCCGGTCT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G00 TCTGATCAACCAAAGTCAAACCCACTACACACAGAATCCTGCGGCTATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCTGATCAACCAAAGTCAAACCCACTACACACAGAATCCTGCGGCTATCTTCTACGGCCACCACCACCATACACCTCCGCCGGCAAAGCGGCTCAACCCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G00 GGTCCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGTCTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GGTCCCGTGGGGATAACAGAGCAGCTGGTTAAGGCAGCAGAGGTCATAGAGAGCGACACGTGTCTAGCTCAGGGGATATTGGCGCGGCTCAATCAACAGC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G00 TCTCTTCTCCCGTCGGGAAGCCATTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAATAATCTCCTTCACAACGTCTCCCAAACCCTAAACCCTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCTCTTCTCCCGTCGGGAAGCCATTAGAAAGAGCAGCTTTTTACTTCAAAGAAGCTCTCAATAATCTCCTTCACAACGTCTCCCAAACCCTAAACCCTTA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G00 TTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAGATCTCTCCCGTTCTTCAGTTCGCCAACTTTACCTCCAACCAAGCCCTCTTAGAGTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TTCCCTCATCTTCAAGATCGCTGCTTACAAATCCTTCTCAGAGATCTCTCCCGTTCTTCAGTTCGCCAACTTTACCTCCAACCAAGCCCTCTTAGAGTCC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G00 TTCCATGGCTTCCACCGTCTCCACATCATCGACTTCGATATCGGCTACGGTGGCCAATGGGCTTCCCTCATGCAAGAGCTTGTTCTCCGCGACAACGCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TTCCATGGCTTCCACCGTCTCCACATCATCGACTTCGATATCGGCTACGGTGGCCAATGGGCTTCCCTCATGCAAGAGCTTGTTCTCCGCGACAACGCCG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G00 CTCCTCTCTCCCTCAAGATCACCGTTTTCGCTTCTCCGGCGAACCACGACCAGCTCGAACTTGGCTTCACTCAAGACAACCTCAAGCACTTCGCCTCTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTCCTCTCTCCCTCAAGATCACCGTTTTCGCTTCTCCGGCGAACCACGACCAGCTCGAACTTGGCTTCACTCAAGACAACCTCAAGCACTTCGCCTCTGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G00 GATCAACATCTCCCTTGACATCCAAGTTTTGAGCTTAGACCTCCTCGGCTCCATCTCGTGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GATCAACATCTCCCTTGACATCCAAGTTTTGAGCTTAGACCTCCTCGGCTCCATCTCGTGGCCTAACTCGTCGGAGAAAGAAGCTGTCGCCGTTAACATC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G00 TCCGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGACGATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCCGCCGCGTCCTTCTCGCACCTCCCTTTGGTCCTCCGTTTCGTGAAGCATCTATCTCCGACGATCATCGTCTGCTCCGACAGAGGATGCGAGAGGACGG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G00 ATCTGCCCTTCTCTCAACAGCTCGCCCACTCGCTGCACTCACACACCGCTCTCTTCGAATCCCTCGACGCCGTCAACGCCAACCTCGACGCAATGCAGAA :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ATCTGCCCCTCTCTCAACAGCTCGCCCACTCGCTGCACTCACACACCGCTCTCTTCGAATCCCTCGACGCCGTCAACGCCAACCTCGACGCAATGCAGAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G00 GATCGAGAGGTTTCTTATACAGCCGGAGATAGAGAAGCTGGTGTTGGATCGTAGCCGTCCGATAGAAAGGCCGATGATGACGTGGCAAGCGATGTTTCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GATCGAGAGGTTTCTTATACAGCCGGAGATAGAGAAGCTGGTGTTGGATCGTAGCCGTCCGATAGAAAGGCCGATGATGACGTGGCAAGCGATGTTTCTA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G00 CAGATGGGTTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAAGCCGAGTGTTTAGTCCAACGGACGCCAGTGAGAGGCTTTCACGTCGAGAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CAGATGGGTTTCTCACCGGTGACGCACAGTAACTTCACGGAGTCTCAAGCCGAGTGTTTAGTCCAACGGACGCCAGTGAGAGGCTTTCACGTCGAGAAGA 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 AT4G00 AACATAACTCACTTCTCCTATGTTGGCAAAGGACAGAACTCGTCGGAGTTTCAGCATGGAGATGTCGCTCCTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 AACATAACTCACTTCTCCTATGTTGGCAAAGGACAGAACTCGTCGGAGTTTCAGCATGGAGATGTCGCTCCTCC 1610 1620 1630 1640 1650 1660 1670 10 20 30 40 50 60 70 80 90 100 AT4G00 MPLPFEEFQGKGISCFSSFSSSFPQPPSSPLLSHRKARGGEEEEEEVPAAEPTSVLDSLISPTSSSTVSSSHGGNSAVGGGGDATTDEQCGAIGLGDWEE ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: RE_090 MPLPFEEFQGKGISCFSSFSSPFPQPPSSPLLSHRKARGGEEEEEEVPAAEPTSVLDSLISPTSSSTVSSSHGGNSAVGGGGNATTDEQCGAIGLGDWEE 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G00 QVPHDHEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNPAAIFYGHHHHTPPPAKRLNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 QVPHDHEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDTGFGLDHHSVPPSHVSGLLINQSQTHYTQNPAAIFYGHHHHTPPPAKRLNP 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G00 GPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GPVGITEQLVKAAEVIESDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLES 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G00 FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 FHGFHRLHIIDFDIGYGGQWASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWPNSSEKEAVAVNI 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G00 SAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFL :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 SAASFSHLPLVLRFVKHLSPTIIVCSDRGCERTDLPLSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFL 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 AT4G00 QMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRCRSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 QMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRCRSS 510 520 530 540 550

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