◆◆◆RE_0904 detail◆◆◆

Code name	RE_0904
Locus	AT4G17230
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0420_アミノ酸配列70%以上一致
sequence	>RE_0904_861bp ATGGTGTCAGTCTCAGGCAGTCCGATCCAACGGCTAGGCACTTACATGGCAGAAGGGCTTAGAGCGAGGCTTGAGGGGTCTGGGAGCAATATATACAAAT CCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACATGAGTGTTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACTGCGAA TGTTGAGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGATTTTCAGATTGCACAGGGATCACAATACATGTTTTTGATTCAGGAGCTT GCGAAACGCCCTGGTGGGCCGCCGTTGCTGCGTGTGACGGGTGTGGATGATTCACAGTCCACCTATGCTCGTGGGGGAGGACTCAGCTTGGTAGGTGAGA GGCTTGCAACTTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTTCACGATGCCATCATGTCTGGGTGCAAGGTGCAGCGGGAACATCTCGGGTTGGAACC TGGCTTTGCTGTTGTTGTGAACTTCCCATATGTATTACACCACATGCCAGACGAGAGCGTAAGTGTTGAAAATCACAGAGACAGGCTGCTGCATCTGATC AAGAGCCTCTCCCCAAAACTGGTTACTCTAGTAGAGCAAGAATCCAACACAAACACCTCGCCATTCCTGTCACGGTTTGTGGAAACACTGGATTACTACA CAGCGATGTTTGAGTCGATAGATGCAGCACGGCCACGGGATGATAAGCAGAGAATCAGCGCAGAACAACACTGTGTAGCAAGAGACATAGTGAACATGAT AGCATGTGAGGAGTCAGAGAGAGTAGAGAGACACGAGGTACTGGGAAATGGAGGGTCAGAA >RE_0904_translated MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQEL AKRPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLI KSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGNGGSE
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 860/1587 (54.2%)（アミノ酸配列で282/529 (53.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G17 ATGCAAACGTCTCAGAAACATCACAGTGCGGCTGGACTGCACATGCTGTATCCTCAAGTCTACTGTTCACCTCAGTTTCAAGCGAAAGACAACAAAGGCT RE_090 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT4G17 TCTCTGATATCCCGTCCAAAGAAAACTTTTTTACCCTCGAATCCTCCACTGCTTCTGGTAGTCTTCCTTCGTATGACTCTCCTTCTGTGAGCATTACATC RE_090 ---------------------------------------------------------------------------------------------------- 210 220 230 240 250 260 270 280 290 300 AT4G17 TGGCCGGAGCCCGTTTTCTCCTCAGGGCTCTCAGTCTTGCATCTCGGATCTCCATCATTCCCCTGACAACGTCTATGGATCACCTTTGAGTGGGGTGTCA RE_090 ---------------------------------------------------------------------------------------------------- 310 320 330 340 350 360 370 380 390 400 AT4G17 TCTCTTGCCTATGATGAAGCTGGAGTCAAGAGTAAGATTCGGGAACTTGAGGTCTCGCTGCTGAGTGGTGATACAAAAGTTGAAGAATTCTCAGGTTTTA RE_090 ---------------------------------------------------------------------------------------------------- 410 420 430 440 450 460 470 480 490 500 AT4G17 GCCCCGCTGCTGGGAAGTCGTGGAACTGGGATGAACTTTTGGCTTTGACTCCACAGTTGGACTTGAAAGAGGTGCTGGTGGAGGCTGCTCGGGCAGTCGC RE_090 ---------------------------------------------------------------------------------------------------- 510 520 530 540 550 560 570 580 590 600 AT4G17 TGATGGGGATTTCGCTACAGCGTATGGATTCCTTGATGTCTTGGAACAGATGGTGTCAGTCTCAGGCAGTCCGATCCAACGGCTAGGCACTTACATGGCA ::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 -------------------------------------------------ATGGTGTCAGTCTCAGGCAGTCCGATCCAACGGCTAGGCACTTACATGGCA 10 20 30 40 50 610 620 630 640 650 660 670 680 690 700 AT4G17 GAAGGGCTTAGAGCGAGGCTTGAGGGGTCTGGGAGCAATATATACAAATCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACATGAGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GAAGGGCTTAGAGCGAGGCTTGAGGGGTCTGGGAGCAATATATACAAATCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACATGAGTG 60 70 80 90 100 110 120 130 140 150 710 720 730 740 750 760 770 780 790 800 AT4G17 TTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACTGCGAATGTTGAGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACTGCGAATGTTGAGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGA 160 170 180 190 200 210 220 230 240 250 810 820 830 840 850 860 870 880 890 900 AT4G17 TTTTCAGATTGCACAGGGATCACAATACATGTTTTTGATTCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGTTGCTGCGTGTGACGGGTGTGGATGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TTTTCAGATTGCACAGGGATCACAATACATGTTTTTGATTCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGTTGCTGCGTGTGACGGGTGTGGATGAT 260 270 280 290 300 310 320 330 340 350 910 920 930 940 950 960 970 980 990 1000 AT4G17 TCACAGTCCACCTATGCTCGTGGGGGAGGACTCAGCTTGGTAGGTGAGAGGCTTGCAACTTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTTCACGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCACAGTCCACCTATGCTCGTGGGGGAGGACTCAGCTTGGTAGGTGAGAGGCTTGCAACTTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTTCACGATG 360 370 380 390 400 410 420 430 440 450 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G17 CCATCATGTCTGGGTGCAAGGTGCAGCGGGAACATCTCGGGTTGGAACCTGGCTTTGCTGTTGTTGTGAACTTCCCATATGTATTACACCACATGCCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CCATCATGTCTGGGTGCAAGGTGCAGCGGGAACATCTCGGGTTGGAACCTGGCTTTGCTGTTGTTGTGAACTTCCCATATGTATTACACCACATGCCAGA 460 470 480 490 500 510 520 530 540 550 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G17 CGAGAGCGTAAGTGTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTGGTTACTCTAGTAGAGCAAGAATCCAACACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CGAGAGCGTAAGTGTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTGGTTACTCTAGTAGAGCAAGAATCCAACACA 560 570 580 590 600 610 620 630 640 650 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G17 AACACCTCGCCATTCCTGTCACGGTTTGTGGAAACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGCAGCACGGCCACGGGATGATAAGCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 AACACCTCGCCATTCCTGTCACGGTTTGTGGAAACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGCAGCACGGCCACGGGATGATAAGCAGA 660 670 680 690 700 710 720 730 740 750 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G17 GAATCAGCGCAGAACAACACTGTGTAGCAAGAGACATAGTGAACATGATAGCATGTGAGGAGTCAGAGAGAGTAGAGAGACACGAGGTACTGGGGATATG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: ::: RE_090 GAATCAGCGCAGAACAACACTGTGTAGCAAGAGACATAGTGAACATGATAGCATGTGAGGAGTCAGAGAGAGTAGAGAGACACGAGGTACT-GGGAAATG 760 770 780 790 800 810 820 830 840 850 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G17 GAGGGTCAGAATGATGATGGCTGGGTTCACGGGTTGGCCGGTCAGCACATCTGCAGCGTTTGCAGCGAGTGAGATGCTGAAAGCTTATGACAAAAACTAC ::::::::::: RE_090 GAGGGTCAGAA----------------------------------------------------------------------------------------- 860 1510 1520 1530 1540 1550 1560 1570 1580 AT4G17 AAACTGGGAGGCCATGAAGGAGCGCTCTACCTCTTCTGGAAGAGACGACCCATGGCTACATGTTCCGTGTGGAAGCCAAACCCAAAC RE_090 --------------------------------------------------------------------------------------- 10 20 30 40 50 60 70 80 90 100 AT4G17 MQTSQKHHSAAGLHMLYPQVYCSPQFQAKDNKGFSDIPSKENFFTLESSTASGSLPSYDSPSVSITSGRSPFSPQGSQSCISDLHHSPDNVYGSPLSGVS RE_090 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT4G17 SLAYDEAGVKSKIRELEVSLLSGDTKVEEFSGFSPAAGKSWNWDELLALTPQLDLKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMA ::::::::::::::::: RE_090 -----------------------------------------------------------------------------------MVSVSGSPIQRLGTYMA 10 210 220 230 240 250 260 270 280 290 300 AT4G17 EGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 EGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDD 20 30 40 50 60 70 80 90 100 110 310 320 330 340 350 360 370 380 390 400 AT4G17 SQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 SQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNT 120 130 140 150 160 170 180 190 200 210 410 420 430 440 450 460 470 480 490 500 AT4G17 NTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGIWRVRMMMAGFTGWPVSTSAAFAASEMLKAYDKNY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 NTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGNGGSE------------------------------ 220 230 240 250 260 270 280 510 520 AT4G17 KLGGHEGALYLFWKRRPMATCSVWKPNPN RE_090 -----------------------------

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