◆◆◆RE_0909 detail◆◆◆

Code name	RE_0909
Locus	AT5G59450
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0909_1830bp ATGGACGCCCTGCTTCAAGTTTCAGTTGATGGGTTTAGATTTGAGAACGGATCTGGATCTTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATC TCTTCCCTGATTTCCACGAGTCTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCCTGTTCTGAAGTACATCAATGA TATGTTGATGGACGAAGAAGACTTCGTAGGTATATCTCGTGACGATTTAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATAATTCAACAGCAATCT CCAGAATCTGATCAGAACACTAGCTCCTCCTCCGATCAAAACTCCGGTGACCAAGATTTCTGTTTTCCCAGCACAACAACAGATTCATCAGCGTTGGTTT CGAGCGGAGAATCACAGAGAAAGTACCGTCATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGGAGAAACAAACAACCAGCGATATTTGTCTCGGA GATGGAAGAGTTAGCAGTGAAGTTAGAACATGTGTTGTTGGTATGCAAAACGAACCAAGAAGAAGAAGAAGAAAGAACAGTAATAACGAAACAGAGTACT CCAAACAGAGCAGGAAGAGCAAAAGGTTCATCGAACAAATCAAAGACGCACAAAACTAATACCGTTGATCTACGAAGTCTCTTGACGCAATGTGCTCAAG CTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTCAAGGAGATAAGAGCACACTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTA CTTTGCAGAGGCGCTTGAGGCACGTATCACTGGAAACATCTCACCGCCTGTTTCTAATCCGTTTCCTTCAAGCACGACATCGATGGTGGACATTTTGAAA GCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGTAACTGATTACTTCGCTGCGAACAAATCGATTTACGAACTTGCTATGAAAGCAACTAAGCTTC ACATAGTTGATTTTGGAGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCTCTGTCTAAACGACCGGGCGGACCACCAATGCTTCGGGTGACTGG AATCGAGCTGCCACAAGCGGGTTTTCGTCCTTCAGACCGCGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGATCAGTTTAATGTTCCTTTTGAG TTCAACTTAATAGCCAAAAAATGGGAAACCATCACTCTTGATGAACTTATGATCAATCCAGGAGAGACAACGGTCGTCAACTGCATTCATCGGTTACAAT ACACTCGTGATGAAACTGTGTCATTAGACTCTCCAAGAGACACGGTTCTGAAGCTATTCAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAA CGGAATGTACAACTCTCCTTTCTTCATGACGAGGTTCCGAGAAGCGCTTTTTCATTACTCTTCACTCCTTGACATGTTTGACACCACAATACACGCAGAG GATGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTTACTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAGGGTGCAGAGCGGTTTGCGAGGCCTG AAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTATTAGCAAGCAGATCATGAAGGAGGCTAAGGAAATTGTGAGGAA ACGTTACCATAGAGATTTTGTGATCGATAGCGATAACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGCTTTTTCTTGCTGGAAACCTGCT GAGAAGTTCACAAACAATAATTTAAACATC >RE_0909_translated MDALLQVSVDGFRFENGSGSCCKPRNNLESGNNLFPDFHESQNQSSPNDSPPTVCLDNSPVLKYINDMLMDEEDFVGISRDDLALQAAERSFYEIIQQQS PESDQNTSSSSDQNSGDQDFCFPSTTTDSSALVSSGESQRKYRHRNDEEDDLENNRRNKQPAIFVSEMEELAVKLEHVLLVCKTNQEEEEERTVITKQST PNRAGRAKGSSNKSKTHKTNTVDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILK AYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFE FNLIAKKWETITLDELMINPGETTVVNCIHRLQYTRDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLLDMFDTTIHAE DEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA EKFTNNNLNI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1826/1830 (99.8%)（アミノ酸配列で607/610 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G59 ATGGACGCCCTGCTTCAAGTTTCAGTTGATGGGTTTAGATTTGAGAACGGATCTGGATCTTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ATGGACGCCCTGCTTCAAGTTTCAGTTGATGGGTTTAGATTTGAGAACGGATCTGGATCTTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G59 TCTTCCCTGATTTCCACGAGTCTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCCTGTTCTGAAGTACATCAATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TCTTCCCTGATTTCCACGAGTCTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCCTGTTCTGAAGTACATCAATGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G59 TATGTTGATGGACGAAGAAGACTTCGTAGGTATATCTCGTGACGATTTAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATAATTCAACAGCAATCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TATGTTGATGGACGAAGAAGACTTCGTAGGTATATCTCGTGACGATTTAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATAATTCAACAGCAATCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G59 CCAGAATCTGATCAGAACACTAGCTCCTCCTCCGATCAAAACTCCGGTGACCAAGATTTCTGTTTTCCCAGCACAACAACAGATTCATCAGCGTTGGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CCAGAATCTGATCAGAACACTAGCTCCTCCTCCGATCAAAACTCCGGTGACCAAGATTTCTGTTTTCCCAGCACAACAACAGATTCATCAGCGTTGGTTT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G59 CGAGCGGAGAATCACAGAGAAAGTACCGTCATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGGAGAAACAAACAACCAGCGATATTTGTCTCGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CGAGCGGAGAATCACAGAGAAAGTACCGTCATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGGAGAAACAAACAACCAGCGATATTTGTCTCGGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G59 GATGGAAGAGTTAGCAGTGAAGTTAGAACATGTGTTGTTGGTATGCAAAACGAACCAAGAAGAAGAAGAAGAAAGAACAGTAATAACGAAACAGAGTACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GATGGAAGAGTTAGCAGTGAAGTTAGAACATGTGTTGTTGGTATGCAAAACGAACCAAGAAGAAGAAGAAGAAAGAACAGTAATAACGAAACAGAGTACT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G59 CCAAACAGAGCAGGAAGAGCAAAAGGTTCATCGAACAAATCAAAGACGCACAAAACTAATACCGTTGATCTACGAAGTCTCTTGACGCAATGTGCTCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CCAAACAGAGCAGGAAGAGCAAAAGGTTCATCGAACAAATCAAAGACGCACAAAACTAATACCGTTGATCTACGAAGTCTCTTGACGCAATGTGCTCAAG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G59 CTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTCAAGGAGATAAGAGCACACTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTCAAGGAGATAAGAGCACACTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G59 CTTTGCAGAGGCGCTTGAGGCACGTATCACTGGAAACATCTCACCGCCTGTTTCTAATCCGTTTCCTTCAAGCACGACATCGATGGTGGACATTTTGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 CTTTGCAGAGGCGCTTGAGGCACGTATCACTGGAAACATCTCACCGCCTGTTTCTAATCCGTTTCCTTCAAGCACGACATCGATGGTGGACATTTTGAAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G59 GCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGTAACTGATTACTTCGCTGCGAACAAATCGATTTACGAACTTGCTATGAAAGCAACTAAGCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGTAACTGATTACTTCGCTGCGAACAAATCGATTTACGAACTTGCTATGAAAGCAACTAAGCTTC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G59 ACATAGTTGATTTTGGAGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCTCTGTCTAAACGACCGGGCGGACCACCAATGCTTCGGGTGACTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ACATAGTTGATTTTGGAGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCTCTGTCTAAACGACCGGGCGGACCACCAATGCTTCGGGTGACTGG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G59 AATCGAGCTGCCACAAGCGGGTTTTCGTCCTTCAGACCGCGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGATCAGTTTAATGTTCCTTTTGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 AATCGAGCTGCCACAAGCGGGTTTTCGTCCTTCAGACCGCGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGATCAGTTTAATGTTCCTTTTGAG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G59 TTCAACTTCATAGCCAAAAAATGGGAAACCATCACTCTTGATGAACTTATGATCAATCCAGGAGAGACAACGGTCGTCAACTGCATTCATCGGTTACAAT :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 TTCAACTTAATAGCCAAAAAATGGGAAACCATCACTCTTGATGAACTTATGATCAATCCAGGAGAGACAACGGTCGTCAACTGCATTCATCGGTTACAAT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G59 ACACTCCTGATGAAACTGTGTCATTAGACTCTCCAAGAGACACGGTTCTGAAGCTATTCAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAA :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ACACTCGTGATGAAACTGTGTCATTAGACTCTCCAAGAGACACGGTTCTGAAGCTATTCAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT5G59 CGGAATGTACAACTCTCCTTTCTTCATGACGAGGTTCCGAGAAGCGCTTTTTCATTACTCTTCACTCTTTGACATGTTTGACACCACAATACACGCAGAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: RE_090 CGGAATGTACAACTCTCCTTTCTTCATGACGAGGTTCCGAGAAGCGCTTTTTCATTACTCTTCACTCCTTGACATGTTTGACACCACAATACACGCAGAG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT5G59 GATGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTTACTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAGGGTGCAGAGCGGTTTGCGAGGCCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 GATGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTTACTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAGGGTGCAGAGCGGTTTGCGAGGCCTG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT5G59 AAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTATTAGCAAACAGATCATGAAGGAGGCTAAGGAAATTGTGAGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: RE_090 AAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTATTAGCAAGCAGATCATGAAGGAGGCTAAGGAAATTGTGAGGAA 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT5G59 ACGTTACCATAGAGATTTTGTGATCGATAGCGATAACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGCTTTTTCTTGCTGGAAACCTGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 ACGTTACCATAGAGATTTTGTGATCGATAGCGATAACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGCTTTTTCTTGCTGGAAACCTGCT 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 AT5G59 GAGAAGTTCACAAACAATAATTTAAACATC :::::::::::::::::::::::::::::: RE_090 GAGAAGTTCACAAACAATAATTTAAACATC 1810 1820 1830 10 20 30 40 50 60 70 80 90 100 AT5G59 MDALLQVSVDGFRFENGSGSCCKPRNNLESGNNLFPDFHESQNQSSPNDSPPTVCLDNSPVLKYINDMLMDEEDFVGISRDDLALQAAERSFYEIIQQQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 MDALLQVSVDGFRFENGSGSCCKPRNNLESGNNLFPDFHESQNQSSPNDSPPTVCLDNSPVLKYINDMLMDEEDFVGISRDDLALQAAERSFYEIIQQQS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G59 PESDQNTSSSSDQNSGDQDFCFPSTTTDSSALVSSGESQRKYRHRNDEEDDLENNRRNKQPAIFVSEMEELAVKLEHVLLVCKTNQEEEEERTVITKQST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 PESDQNTSSSSDQNSGDQDFCFPSTTTDSSALVSSGESQRKYRHRNDEEDDLENNRRNKQPAIFVSEMEELAVKLEHVLLVCKTNQEEEEERTVITKQST 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G59 PNRAGRAKGSSNKSKTHKTNTVDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 PNRAGRAKGSSNKSKTHKTNTVDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILK 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G59 AYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 AYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFE 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G59 FNFIAKKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAE :: :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: RE_090 FNLIAKKWETITLDELMINPGETTVVNCIHRLQYTRDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLLDMFDTTIHAE 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G59 DEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_090 DEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA 510 520 530 540 550 560 570 580 590 600 610 AT5G59 EKFTNNNLNI :::::::::: RE_090 EKFTNNNLNI 610

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