◆◆◆RE_0910 detail◆◆◆

Code name	RE_0910
Locus	AT5G66770
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0910_1749bp ATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCTCAACAAGTCATCAAACAGAAGCAGCAACAAGAACAACAGCAGCAACATCATCAAG ACCATCAGATTTTTGGTATTAATCCTTTGTCTCTTAACCCATGGCCCAATACTTCCCTCGGGTTTGGGCTTTCAGGTTCGGCTTTTCCCGACCCGTTTCA AGTTACCGGCGGCGGAGATTCCAACGATCCTGGCTTTCCTTTTCCTAACTTAGACCACCACCACGCCACAACCACCGGCGGTGGGTTCAGGTTATCTGAT TTCGGCGGTGGAACCGGCGGCGGCGAGTTTGAGTCCGACGAGTGGATGGAGACTCTTATCAGCGGTGGAGACTCCGTTGCAGACGGTCCTGATTGTGACA CCTGGCATGATAATCCCGATTACGTAATCTACGGTCCTGATCCATTCGATACTTACCCGAGTCGACTCAGTGTCCAACCGCCAGATCTAAACCGAGTCAT TGACACGTCGAGTCCGCTTCCTCCGCCGACCTTGTGGCCTCCTTCTTCGCCATTATCGATTCCTCCGCTTACTCATGAGTCACCAACCAAAGAAGATCCA GAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCACCTCTCCTCAAAGCTATATACGACTGTGCACGGATCTCAGACTCTGACCCTAACGAAG CTTCCAAGACGCTTCTTCAGATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGTTGCATTTTACTTCACGGAAGCTCTCTCCAACAGACT GTCTCCTAATTCGCCGGCGACGTCGTCTTCTTCTTCATCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCTTGTCCTTACTCCAAATTC GCACATTTGACGGCGAATCAAGCGATTCTAGAAGCGACGGAGAAGTCGAACAAGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATACAATGGCCTG CTCTTCTTCAAGCTCTAGCTACTCGTACTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTCCATCTCTCGGTGAATCTCCGGAACCGTC GTTAATCGCCACCGGAAACCGCCTCCGTGATTTCGCCAAGGTTCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTACTTAACGGG TCAAGTTTCCGGGTCGACCCGGATGAAGTACTGGCCGTGAGTTTCATGCTCCAGCTCTACAAATTACTCGACGAGACGCCGACGATAGTTGACACCGCAC TACGGCTCGCCAAATCGTTGAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTCGGTTTCGCTAACCGGGTAAAGAACGCGCT TCAATTCTATTCCGCGGTTTTCGAATCCCTTGAACCGAACTTGGGGCGTGATTCGGAGGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGGCCGGAGAATC TCGGGTTTGATTGGACCGGAGAAAACCGGAATTCATAGAGAAAGAATGGAAGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAATCGG TTAAGCTGAGTAATTACGCAGTGAGCCAAGCGAAGATTCTATTGTGGAATTACAATTACAGCAATTTGTATTCAATTGTTGAATCTAAGCCTGGCTTCAT CTCTTTGGCCTGGAACGATTTACCTCTCCTCACTCTTTCTTCCTGGCGA >RE_0910_translated MAYMCTDSGNLMAIAQQVIKQKQQQEQQQQHHQDHQIFGINPLSLNPWPNTSLGFGLSGSAFPDPFQVTGGGDSNDPGFPFPNLDHHHATTTGGGFRLSD FGGGTGGGEFESDEWMETLISGGDSVADGPDCDTWHDNPDYVIYGPDPFDTYPSRLSVQPPDLNRVIDTSSPLPPPTLWPPSSPLSIPPLTHESPTKEDP ETNDSEDDDFDLEPPLLKAIYDCARISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLILSYKTLNDACPYSKF AHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNG SSFRVDPDEVLAVSFMLQLYKLLDETPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRI SGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSWR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1747/1752 (99.7%)（アミノ酸配列で581/584 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G66 ATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCTCAACAAGTCATCAAACAGAAGCAGCAACAAGAACAACAACAGCAGCAACATCATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: RE_091 ATGGCTTACATGTGCACTGATAGTGGCAATCTAATGGCTATTGCTCAACAAGTCATCAAACAGAAGCAGCAACAAG---AACAACAGCAGCAACATCATC 10 20 30 40 50 60 70 80 90 110 120 130 140 150 160 170 180 190 200 AT5G66 AAGACCATCAGATTTTTGGTATTAATCCTTTGTCTCTTAACCCATGGCCCAATACTTCCCTCGGGTTTGGGCTTTCAGGTTCGGCTTTTCCCGACCCGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 AAGACCATCAGATTTTTGGTATTAATCCTTTGTCTCTTAACCCATGGCCCAATACTTCCCTCGGGTTTGGGCTTTCAGGTTCGGCTTTTCCCGACCCGTT 100 110 120 130 140 150 160 170 180 190 210 220 230 240 250 260 270 280 290 300 AT5G66 TCAAGTTACCGGCGGCGGAGATTCCAACGATCCTGGCTTTCCTTTTCCTAACTTAGACCACCACCACGCCACAACCACCGGCGGTGGGTTCAGGTTATCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 TCAAGTTACCGGCGGCGGAGATTCCAACGATCCTGGCTTTCCTTTTCCTAACTTAGACCACCACCACGCCACAACCACCGGCGGTGGGTTCAGGTTATCT 200 210 220 230 240 250 260 270 280 290 310 320 330 340 350 360 370 380 390 400 AT5G66 GATTTCGGCGGTGGAACCGGCGGCGGCGAGTTTGAGTCCGACGAGTGGATGGAGACTCTTATCAGCGGTGGAGACTCCGTTGCAGACGGTCCTGATTGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 GATTTCGGCGGTGGAACCGGCGGCGGCGAGTTTGAGTCCGACGAGTGGATGGAGACTCTTATCAGCGGTGGAGACTCCGTTGCAGACGGTCCTGATTGTG 300 310 320 330 340 350 360 370 380 390 410 420 430 440 450 460 470 480 490 500 AT5G66 ACACCTGGCATGATAATCCCGATTACGTAATCTACGGTCCTGATCCATTCGATACTTACCCGAGTCGACTCAGTGTCCAACCGTCAGATCTAAACCGAGT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: RE_091 ACACCTGGCATGATAATCCCGATTACGTAATCTACGGTCCTGATCCATTCGATACTTACCCGAGTCGACTCAGTGTCCAACCGCCAGATCTAAACCGAGT 400 410 420 430 440 450 460 470 480 490 510 520 530 540 550 560 570 580 590 600 AT5G66 CATTGACACGTCGAGTCCGCTTCCTCCGCCGACCTTGTGGCCTCCTTCTTCGCCATTATCGATTCCTCCGCTTACTCATGAGTCACCAACCAAAGAAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 CATTGACACGTCGAGTCCGCTTCCTCCGCCGACCTTGTGGCCTCCTTCTTCGCCATTATCGATTCCTCCGCTTACTCATGAGTCACCAACCAAAGAAGAT 500 510 520 530 540 550 560 570 580 590 610 620 630 640 650 660 670 680 690 700 AT5G66 CCAGAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCACCTCTCCTCAAAGCTATATACGACTGTGCACGGATCTCAGACTCTGACCCTAACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 CCAGAGACTAACGACTCCGAAGACGATGACTTCGACCTAGAACCACCTCTCCTCAAAGCTATATACGACTGTGCACGGATCTCAGACTCTGACCCTAACG 600 610 620 630 640 650 660 670 680 690 710 720 730 740 750 760 770 780 790 800 AT5G66 AAGCTTCCAAGACGCTTCTTCAGATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGTTGCATTTTACTTCACGGAAGCTCTCTCCAACAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 AAGCTTCCAAGACGCTTCTTCAGATCCGAGAATCTGTATCGGAGCTAGGTGATCCGACGGAGCGAGTTGCATTTTACTTCACGGAAGCTCTCTCCAACAG 700 710 720 730 740 750 760 770 780 790 810 820 830 840 850 860 870 880 890 900 AT5G66 ACTGTCTCCTAATTCGCCGGCGACGTCGTCTTCTTCTTCATCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCTTGTCCTTACTCCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 ACTGTCTCCTAATTCGCCGGCGACGTCGTCTTCTTCTTCATCTACGGAGGATTTAATCTTATCTTATAAAACCCTAAACGACGCTTGTCCTTACTCCAAA 800 810 820 830 840 850 860 870 880 890 910 920 930 940 950 960 970 980 990 1000 AT5G66 TTCGCACATTTGACGGCGAATCAAGCGATTCTAGAAGCGACGGAGAAGTCGAACAAGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATACAATGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 TTCGCACATTTGACGGCGAATCAAGCGATTCTAGAAGCGACGGAGAAGTCGAACAAGATTCACATCGTCGATTTTGGAATCGTTCAAGGTATACAATGGC 900 910 920 930 940 950 960 970 980 990 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G66 CTGCTCTTCTTCAAGCTCTAGCTACTCGTACTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTCCATCTCTCGGTGAATCTCCGGAACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 CTGCTCTTCTTCAAGCTCTAGCTACTCGTACTTCTGGTAAACCCACTCAAATCCGGGTCTCGGGTATACCCGCTCCATCTCTCGGTGAATCTCCGGAACC 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G66 GTCGTTAATCGCCACCGGAAACCGCCTCCGTGATTTCGCCAAGGTTCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTACTTAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 GTCGTTAATCGCCACCGGAAACCGCCTCCGTGATTTCGCCAAGGTTCTGGATCTGAATTTCGATTTCATCCCAATTCTCACTCCCATACATTTACTTAAC 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT5G66 GGGTCAAGTTTCCGGGTCGACCCGGATGAAGTACTGGCCGTGAATTTCATGCTCCAGCTCTACAAATTACTCGACGAGACGCCGACGATAGTTGACACCG ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 GGGTCAAGTTTCCGGGTCGACCCGGATGAAGTACTGGCCGTGAGTTTCATGCTCCAGCTCTACAAATTACTCGACGAGACGCCGACGATAGTTGACACCG 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT5G66 CACTACGGCTCGCCAAATCGTTGAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTCGGTTTCGCTAACCGGGTAAAGAACGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 CACTACGGCTCGCCAAATCGTTGAACCCGAGGGTCGTCACTCTCGGAGAATACGAAGTGAGCTTAAACCGGGTCGGTTTCGCTAACCGGGTAAAGAACGC 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT5G66 GCTTCAATTCTATTCCGCGGTTTTCGAATCCCTTGAACCGAACTTGGGGCGTGATTCGGAGGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGGCCGGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 GCTTCAATTCTATTCCGCGGTTTTCGAATCCCTTGAACCGAACTTGGGGCGTGATTCGGAGGAGAGAGTGAGAGTTGAGCGAGAGTTGTTCGGCCGGAGA 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT5G66 ATCTCGGGTTTGATTGGACCGGAGAAAACCGGAATTCATAGAGAAAGAATGGAAGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 ATCTCGGGTTTGATTGGACCGGAGAAAACCGGAATTCATAGAGAAAGAATGGAAGAGAAAGAGCAATGGCGGGTATTAATGGAGAATGCCGGTTTTGAAT 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT5G66 CGGTTAAGCTGAGTAATTACGCAGTGAGCCAAGCGAAGATTCTATTGTGGAATTACAATTACAGCAATTTGTATTCAATTGTTGAATCTAAGCCTGGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 CGGTTAAGCTGAGTAATTACGCAGTGAGCCAAGCGAAGATTCTATTGTGGAATTACAATTACAGCAATTTGTATTCAATTGTTGAATCTAAGCCTGGCTT 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1710 1720 1730 1740 1750 AT5G66 CATCTCTTTGGCCTGGAACGATTTACCTCTCCTCACTCTTTCTTCCTGGCGA :::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 CATCTCTTTGGCCTGGAACGATTTACCTCTCCTCACTCTTTCTTCCTGGCGA 1700 1710 1720 1730 1740 10 20 30 40 50 60 70 80 90 100 AT5G66 MAYMCTDSGNLMAIAQQVIKQKQQQEQQQQQHHQDHQIFGINPLSLNPWPNTSLGFGLSGSAFPDPFQVTGGGDSNDPGFPFPNLDHHHATTTGGGFRLS :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 MAYMCTDSGNLMAIAQQVIKQKQQQE-QQQQHHQDHQIFGINPLSLNPWPNTSLGFGLSGSAFPDPFQVTGGGDSNDPGFPFPNLDHHHATTTGGGFRLS 10 20 30 40 50 60 70 80 90 110 120 130 140 150 160 170 180 190 200 AT5G66 DFGGGTGGGEFESDEWMETLISGGDSVADGPDCDTWHDNPDYVIYGPDPFDTYPSRLSVQPSDLNRVIDTSSPLPPPTLWPPSSPLSIPPLTHESPTKED ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: RE_091 DFGGGTGGGEFESDEWMETLISGGDSVADGPDCDTWHDNPDYVIYGPDPFDTYPSRLSVQPPDLNRVIDTSSPLPPPTLWPPSSPLSIPPLTHESPTKED 100 110 120 130 140 150 160 170 180 190 210 220 230 240 250 260 270 280 290 300 AT5G66 PETNDSEDDDFDLEPPLLKAIYDCARISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLILSYKTLNDACPYSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 PETNDSEDDDFDLEPPLLKAIYDCARISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSPATSSSSSSTEDLILSYKTLNDACPYSK 200 210 220 230 240 250 260 270 280 290 310 320 330 340 350 360 370 380 390 400 AT5G66 FAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 FAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLN 300 310 320 330 340 350 360 370 380 390 410 420 430 440 450 460 470 480 490 500 AT5G66 GSSFRVDPDEVLAVNFMLQLYKLLDETPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRR ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 GSSFRVDPDEVLAVSFMLQLYKLLDETPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRR 400 410 420 430 440 450 460 470 480 490 510 520 530 540 550 560 570 580 AT5G66 ISGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_091 ISGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSWR 500 510 520 530 540 550 560 570 580

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