◆◆◆RE_0934 detail◆◆◆

Code name	RE_0934
Locus	AT4G17950
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.10%一致
comment	0520_20080115_0934_FRW1_555
sequence	>RE_0934_1308bp ATGGATTCCAGAGAGATCCACCACCAACAACAGCAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCAACATCTACAACAACAGCAACAACCAC CGCCAGGGATGTTAATGAGTCACCACAATTCCTACAATCGAAACCCTAACGCCGCCGCCGCTGTTTTAATGGGTCACAACACCTCCACATCTCAAGCTAT GCATCAAAGATTACCTTTTGGTGGTTCTATGTCACCGCATCAGCCTCAACAACATCAGTATCATCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACT CTTGAATCTCTTGGATTTGATGGATCGCCTTCTTCTGTTGCCGCCACTCAACAACATTCGATGAGATTTGGGATCGACCATCAACAGGTTAAGAAGAAAC GAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTGGTGGTGGTAGTAACATTGCTCTTGGTTTGGCTCCTACTTCGCCTCTTCCTTCTGCTTCTAATTC TTACGGTGGTGGAAATGAAGGAGGTGGTGGTGGTGATAGCGCCGGAGCTAATGCTAACTCTTCCGGTCCACCTGCTAAACGGAACAGAGGACGTCCTCCT GGCTCCGGTAAGAAGCAGCTCGATGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACGCCTCATGTCATTGAGGTTAAAACAGGAGAGGACATAGCTACGA AGATATTGGCGTTTACGAACCAAGGGCCACGCGCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTAATGTGATGCTTCGTCAAGCTAACAATAGCAA TCCTACTGGAACTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTTCTTTCTTGAATTCTGAGAGTAATGGTACTGTGACCAAAACTGGT AACTTGAGTGTGTCGCTGGCTGGACACGAAGGCCGGATTGTGGGTGGATGTGTTGATGGAATGCTAGTAGCTGGATCACAAGTCCAGGTCATTGTGGGAA GCTTTGTACCAGATGGAAGGAAGCAGAAACAAAGTGCGGGGCGTGCTCAGAATACTCCGGAGCCAGCTTCAGCACCAGCCAATATGTTGAGCTTTGGTGG TGTTGGTGGACCGGGAAGCCCTCGATCTCAAGGACAACAACACTCGAGCGAGTCATCAGAGGAAAACGAAAGTAATTCTCCGTTGCACCGTAGAAGCAAC AACAACAACAGCAACAATCATGGGATATTTGGAAACTCTACACCTCAACCGCTTCACCAAATTCCTATGCAGATGTACCAGAATCTCTGGCCTGGCAACA GTCCTCAA >RE_0934_translated MDSREIHHQQQQQQQQQQQQQQQQQHLQQQQQPPPGMLMSHHNSYNRNPNAAAAVLMGHNTSTSQAMHQRLPFGGSMSPHQPQQHQYHHPQPQQQIDQKT LESLGFDGSPSSVAATQQHSMRFGIDHQQVKKKRGRPRKYAADGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANSSGPPAKRNRGRPP GSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTG NLSVSLAGHEGRIVGGCVDGMLVAGSQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPANMLSFGGVGGPGSPRSQGQQHSSESSEENESNSPLHRRSN NNNSNNHGIFGNSTPQPLHQIPMQMYQNLWPGNSPQ
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1307/1317 (99.2%)（アミノ酸配列で435/439 (99.1%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G17 ATGGATTCCAGAGAGATCCACCACCAACAACAGCAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCAACATCTACAACAACAGCAACAACCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 ATGGATTCCAGAGAGATCCACCACCAACAACAGCAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCAACATCTACAACAACAGCAACAACCAC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G17 CGCCAGGGATGTTAATGAGTCACCACAATTCCTACAATCGAAACCCTAACGCCGCCGCCGCTGTTTTAATGGGTCACAACACCTCCACATCTCAAGCTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CGCCAGGGATGTTAATGAGTCACCACAATTCCTACAATCGAAACCCTAACGCCGCCGCCGCTGTTTTAATGGGTCACAACACCTCCACATCTCAAGCTAT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G17 GCATCAAAGATTACCTTTTGGTGGTTCTATGTCACCGCATCAGCCTCAACAACATCAGTATCATCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 GCATCAAAGATTACCTTTTGGTGGTTCTATGTCACCGCATCAGCCTCAACAACATCAGTATCATCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G17 CTTGAATCTCTTGGATTTGATGGATCGCCTTCTTCTGTTGCCGCCACTCAACAACATTCGATGAGATTTGGGATCGACCATCAACAGGTTAAGAAGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CTTGAATCTCTTGGATTTGATGGATCGCCTTCTTCTGTTGCCGCCACTCAACAACATTCGATGAGATTTGGGATCGACCATCAACAGGTTAAGAAGAAAC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G17 GAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTGGTGGTGGTGGTGGTGGTAGTAACATTGCTCTTGGTTTGGCTCCTACTTCGCCTCTTCCTTCTGC :::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 GAGGTAGACCTAGGAAGTATGCTGCTGA---------TGGTGGTGGTGGTGGTAGTAACATTGCTCTTGGTTTGGCTCCTACTTCGCCTCTTCCTTCTGC 410 420 430 440 450 460 470 480 490 510 520 530 540 550 560 570 580 590 600 AT4G17 TTCTAATTCTTACGGTGGTGGAAATGAAGGAGGTGGTGGTGGTGATAGCGCCGGAGCTAATGCTAACTCTTCCGATCCACCTGCTAAACGGAACAGAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: RE_093 TTCTAATTCTTACGGTGGTGGAAATGAAGGAGGTGGTGGTGGTGATAGCGCCGGAGCTAATGCTAACTCTTCCGGTCCACCTGCTAAACGGAACAGAGGA 500 510 520 530 540 550 560 570 580 590 610 620 630 640 650 660 670 680 690 700 AT4G17 CGTCCTCCTGGCTCCGGTAAGAAGCAGCTCGATGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACGCCTCATGTCATTGAGGTTAAAACAGGAGAGGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CGTCCTCCTGGCTCCGGTAAGAAGCAGCTCGATGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACGCCTCATGTCATTGAGGTTAAAACAGGAGAGGACA 600 610 620 630 640 650 660 670 680 690 710 720 730 740 750 760 770 780 790 800 AT4G17 TAGCTACGAAGATATTGGCGTTTACGAACCAAGGGCCACGCGCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTAATGTGATGCTTCGTCAAGCTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TAGCTACGAAGATATTGGCGTTTACGAACCAAGGGCCACGCGCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTAATGTGATGCTTCGTCAAGCTAA 700 710 720 730 740 750 760 770 780 790 810 820 830 840 850 860 870 880 890 900 AT4G17 CAATAGCAATCCTACTGGAACTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTTCTTTCTTGAATTCTGAGAGTAATGGTACTGTGACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CAATAGCAATCCTACTGGAACTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTTCTTTCTTGAATTCTGAGAGTAATGGTACTGTGACC 800 810 820 830 840 850 860 870 880 890 910 920 930 940 950 960 970 980 990 1000 AT4G17 AAAACTGGTAACTTGAGTGTGTCGCTGGCTGGACACGAAGGCCGGATTGTGGGTGGATGTGTTGATGGAATGCTAGTAGCTGGATCACAAGTCCAGGTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 AAAACTGGTAACTTGAGTGTGTCGCTGGCTGGACACGAAGGCCGGATTGTGGGTGGATGTGTTGATGGAATGCTAGTAGCTGGATCACAAGTCCAGGTCA 900 910 920 930 940 950 960 970 980 990 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G17 TTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAAACAAAGTGCGGGGCGTGCTCAGAATACTCCGGAGCCAGCTTCAGCACCAGCCAATATGTTGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAAACAAAGTGCGGGGCGTGCTCAGAATACTCCGGAGCCAGCTTCAGCACCAGCCAATATGTTGAG 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G17 CTTTGGTGGTGTTGGTGGACCGGGAAGCCCTCGATCTCAAGGACAACAACACTCGAGCGAGTCATCAGAGGAAAACGAAAGTAATTCTCCGTTGCACCGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CTTTGGTGGTGTTGGTGGACCGGGAAGCCCTCGATCTCAAGGACAACAACACTCGAGCGAGTCATCAGAGGAAAACGAAAGTAATTCTCCGTTGCACCGT 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G17 AGAAGCAACAACAACAACAGCAACAATCATGGGATATTTGGAAACTCTACACCTCAACCGCTTCACCAAATTCCTATGCAGATGTACCAGAATCTCTGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 AGAAGCAACAACAACAACAGCAACAATCATGGGATATTTGGAAACTCTACACCTCAACCGCTTCACCAAATTCCTATGCAGATGTACCAGAATCTCTGGC 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1310 AT4G17 CTGGCAACAGTCCTCAA ::::::::::::::::: RE_093 CTGGCAACAGTCCTCAA 1300 10 20 30 40 50 60 70 80 90 100 AT4G17 MDSREIHHQQQQQQQQQQQQQQQQQHLQQQQQPPPGMLMSHHNSYNRNPNAAAAVLMGHNTSTSQAMHQRLPFGGSMSPHQPQQHQYHHPQPQQQIDQKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 MDSREIHHQQQQQQQQQQQQQQQQQHLQQQQQPPPGMLMSHHNSYNRNPNAAAAVLMGHNTSTSQAMHQRLPFGGSMSPHQPQQHQYHHPQPQQQIDQKT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G17 LESLGFDGSPSSVAATQQHSMRFGIDHQQVKKKRGRPRKYAADGGGGGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANSSDPPAKRNRG ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_093 LESLGFDGSPSSVAATQQHSMRFGIDHQQVKKKRGRPRKYAAD---GGGGGSNIALGLAPTSPLPSASNSYGGGNEGGGGGDSAGANANSSGPPAKRNRG 110 120 130 140 150 160 170 180 190 210 220 230 240 250 260 270 280 290 300 AT4G17 RPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 RPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVT 200 210 220 230 240 250 260 270 280 290 310 320 330 340 350 360 370 380 390 400 AT4G17 KTGNLSVSLAGHEGRIVGGCVDGMLVAGSQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPANMLSFGGVGGPGSPRSQGQQHSSESSEENESNSPLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 KTGNLSVSLAGHEGRIVGGCVDGMLVAGSQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPANMLSFGGVGGPGSPRSQGQQHSSESSEENESNSPLHR 300 310 320 330 340 350 360 370 380 390 410 420 430 AT4G17 RSNNNNSNNHGIFGNSTPQPLHQIPMQMYQNLWPGNSPQ ::::::::::::::::::::::::::::::::::::::: RE_093 RSNNNNSNNHGIFGNSTPQPLHQIPMQMYQNLWPGNSPQ 400 410 420 430

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