◆◆◆RE_0939 detail◆◆◆

Code name	RE_0939
Locus	AT5G62260
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0428_アミノ酸配列70%以上一致
sequence	>RE_0939_1212bp ATGGAGGAGAAAGGTGAAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGGAGATGAAGCTTTGGTTCCAAGAACAGAGTTTCAACAAAACCCTAGTTTTC TCCAATTCGTGAGTCCCACAACGGTAGTGACTCCTCTCCCTCCTCCACCAGCCCCGTCTTCGGCTCCGGTACCAACCACCGTGACTCCTGGCTCAGCCAC AGCATCAACCGGATCAGATCCGACGAAAAAGAAGAGAGGAAGACCGAGGAAGTACGCACCAGACGGAAGCCTGAACCCTAGGTTTTTGCGACCAACTCTG TCTCCAACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGCAAAGCTCAGCAGCAGCATCAGCCTCTTGAGTTCGTCAAGA AATCTCGCAAATTCGAGTATGGAAGCCCAGCTCCTACTCCTCCTCTTCCTGGGCTCTCATGCTATGTGGGTGCAAATTTTACGACCCATCAATTTACTGT CAATGGCGGTGAGGATGTGACAATGAAGGTTATGCCGTATTCGCAACAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTC ACTCTTGGTCAACCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGGTTTGAGATACTATCGCTATCTGGTTCCTTTATGCCTACTGAAAATGGAG GAACAAAAGGTCGGGCTGGTGGGATGAGCATTTCTTTAGCCGGACCAAATGGCAATATATTTGGTGGTGGCCTTGCCGGTATGCTTATAGCAGCTGGTCC TGTTCAGGTGGTGATGGGAAGTTTCATTGTGATGCATCAAGCAGAACAAAATCAGAAGAAGAAACCTAGAGTTATGGAGGCTTTTGCTCCACCACAACCA CAAGCACCACCACAACTGCAACAACAACAACCTCCTACTTTTACCATAACAACCGTGAATTCAACTTCTCCTTCGGTGAACACCGTAGAGGAGCAGAAAC CACAAGCTTATGGTGGTGGTATAGTGAGACCGATGGCTCAAATGCCTTCTTCTTTCCAAAACGACAATTCAACTATGAACAATTTCACACCGGCCTATCA TGGATACGGGAATATGAACACTGGTACTACTCACAAAGAAGAACATGAAGACGAAGATGGTGGTGATGATGATGATGATTCAGGCGATACTAGGAGCCAA TCTCATAGTGGT >RE_0939_translated MEEKGEISPSGVVTVKGDEALVPRTEFQQNPSFLQFVSPTTVVTPLPPPPAPSSAPVPTTVTPGSATASTGSDPTKKKRGRPRKYAPDGSLNPRFLRPTL SPTPISSSIPLSGDYQWKRGKAQQQHQPLEFVKKSRKFEYGSPAPTPPLPGLSCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNV TLGQPTNAGGTLTYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFIVMHQAEQNQKKKPRVMEAFAPPQP QAPPQLQQQQPPTFTITTVNSTSPSVNTVEEQKPQAYGGGIVRPMAQMPSSFQNDNSTMNNFTPAYHGYGNMNTGTTHKEEHEDEDGGDDDDDSGDTRSQ SHSG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1209/1212 (99.8%)（アミノ酸配列で403/404 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G62 ATGGAGGAGAAAGGTGAAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGGAGATGAAGCTTTGGTTCCAAGAACAGAGTTTCAACAAAACCCTAGTTTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 ATGGAGGAGAAAGGTGAAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGGAGATGAAGCTTTGGTTCCAAGAACAGAGTTTCAACAAAACCCTAGTTTTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G62 TCCAATTCGTGAGTCCCACAACGGTAGTGACTCCTCTCCCTCCTCCACCAGCTCCGTCTTCGGCTCCGGTACCAACCACCGTGACTCCTGGCTCAGCCAC :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TCCAATTCGTGAGTCCCACAACGGTAGTGACTCCTCTCCCTCCTCCACCAGCCCCGTCTTCGGCTCCGGTACCAACCACCGTGACTCCTGGCTCAGCCAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G62 AGCATCAACCGGATCAGATCCGACGAAAAAGAAGAGAGGAAGACCGAGGAAGTACGCACCAGACGGAAGCCTGAACCCTAGGTTTTTGCGACCAACTCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 AGCATCAACCGGATCAGATCCGACGAAAAAGAAGAGAGGAAGACCGAGGAAGTACGCACCAGACGGAAGCCTGAACCCTAGGTTTTTGCGACCAACTCTG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G62 TCTCCAACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGCAAAGCTCAGCAGCAGCATCAGCCTCTTGAGTTCGTCAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TCTCCAACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGCAAAGCTCAGCAGCAGCATCAGCCTCTTGAGTTCGTCAAGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G62 AATCTCACAAATTCGAGTATGGAAGCCCAGCTCCTACTCCTCCTCTTCCTGGGCTCTCATGCTATGTGGGTGCAAATTTTACGACCCATCAATTTACTGT :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 AATCTCGCAAATTCGAGTATGGAAGCCCAGCTCCTACTCCTCCTCTTCCTGGGCTCTCATGCTATGTGGGTGCAAATTTTACGACCCATCAATTTACTGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G62 CAATGGCGGTGAGGATGTGACAATGAAGGTTATGCCGTATTCGCAACAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CAATGGCGGTGAGGATGTGACAATGAAGGTTATGCCGTATTCGCAACAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G62 ACTCTTGGTCAACCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGGTTTGAGATACTATCGCTATCTGGTTCCTTTATGCCTACTGAAAATGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 ACTCTTGGTCAACCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGGTTTGAGATACTATCGCTATCTGGTTCCTTTATGCCTACTGAAAATGGAG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G62 GAACAAAAGGTCGGGCTGGTGGGATGAGCATTTCTTTAGCCGGACCAAATGGCAATATATTTGGTGGTGGCCTTGCCGGTATGCTTATAGCAGCTGGTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 GAACAAAAGGTCGGGCTGGTGGGATGAGCATTTCTTTAGCCGGACCAAATGGCAATATATTTGGTGGTGGCCTTGCCGGTATGCTTATAGCAGCTGGTCC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G62 TGTTCAGGTGGTAATGGGAAGTTTCATTGTGATGCATCAAGCAGAACAAAATCAGAAGAAGAAACCTAGAGTTATGGAGGCTTTTGCTCCACCACAACCA :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TGTTCAGGTGGTGATGGGAAGTTTCATTGTGATGCATCAAGCAGAACAAAATCAGAAGAAGAAACCTAGAGTTATGGAGGCTTTTGCTCCACCACAACCA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G62 CAAGCACCACCACAACTGCAACAACAACAACCTCCTACTTTTACCATAACAACCGTGAATTCAACTTCTCCTTCGGTGAACACCGTAGAGGAGCAGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CAAGCACCACCACAACTGCAACAACAACAACCTCCTACTTTTACCATAACAACCGTGAATTCAACTTCTCCTTCGGTGAACACCGTAGAGGAGCAGAAAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G62 CACAAGCTTATGGTGGTGGTATAGTGAGACCGATGGCTCAAATGCCTTCTTCTTTCCAAAACGACAATTCAACTATGAACAATTTCACACCGGCCTATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 CACAAGCTTATGGTGGTGGTATAGTGAGACCGATGGCTCAAATGCCTTCTTCTTTCCAAAACGACAATTCAACTATGAACAATTTCACACCGGCCTATCA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G62 TGGATACGGGAATATGAACACTGGTACTACTCACAAAGAAGAACATGAAGACGAAGATGGTGGTGATGATGATGATGATTCAGGCGATACTAGGAGCCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TGGATACGGGAATATGAACACTGGTACTACTCACAAAGAAGAACATGAAGACGAAGATGGTGGTGATGATGATGATGATTCAGGCGATACTAGGAGCCAA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 AT5G62 TCTCATAGTGGT :::::::::::: RE_093 TCTCATAGTGGT 1210 10 20 30 40 50 60 70 80 90 100 AT5G62 MEEKGEISPSGVVTVKGDEALVPRTEFQQNPSFLQFVSPTTVVTPLPPPPAPSSAPVPTTVTPGSATASTGSDPTKKKRGRPRKYAPDGSLNPRFLRPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 MEEKGEISPSGVVTVKGDEALVPRTEFQQNPSFLQFVSPTTVVTPLPPPPAPSSAPVPTTVTPGSATASTGSDPTKKKRGRPRKYAPDGSLNPRFLRPTL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G62 SPTPISSSIPLSGDYQWKRGKAQQQHQPLEFVKKSHKFEYGSPAPTPPLPGLSCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNV ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 SPTPISSSIPLSGDYQWKRGKAQQQHQPLEFVKKSRKFEYGSPAPTPPLPGLSCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNV 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G62 TLGQPTNAGGTLTYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFIVMHQAEQNQKKKPRVMEAFAPPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 TLGQPTNAGGTLTYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFIVMHQAEQNQKKKPRVMEAFAPPQP 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G62 QAPPQLQQQQPPTFTITTVNSTSPSVNTVEEQKPQAYGGGIVRPMAQMPSSFQNDNSTMNNFTPAYHGYGNMNTGTTHKEEHEDEDGGDDDDDSGDTRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_093 QAPPQLQQQQPPTFTITTVNSTSPSVNTVEEQKPQAYGGGIVRPMAQMPSSFQNDNSTMNNFTPAYHGYGNMNTGTTHKEEHEDEDGGDDDDDSGDTRSQ 310 320 330 340 350 360 370 380 390 400 AT5G62 SHSG :::: RE_093 SHSG

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