◆◆◆RE_0949 detail◆◆◆

Code name	RE_0949
Locus	AT4G11660
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0949_1131bp ATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGCGGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTG GTGCTGGTGGTGGCGGTGGTGGTAGTGGTGGAGGTGGTGGCGGAGGAGGAGATTCACAGAGGTCAATTCCGACGCCGTTTTTGACGAAAACGTATCAGCT TGTGGAAGATCCGGTTTACGACGAATTGATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGAGATCTTCTTCCC AAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAATACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATT GTTTTAAGAGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATGGCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGT AGCGGCTTCGGCTGTTACAGTAGCAGCTGTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCGTCTAATTCTTCG CCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCTTTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATG AGCGATTGAGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAATATCTACACATTAATGGCGAATTTCACACCGGG TCAAGAAGATTGTGCGCATTTGTTACCTGAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATTATGGCTTCTGAAATAGAG ACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTTGTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTG CAGAGGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGTTAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAA CCATATTGGGTCGTGGCTTGAACTCGGAAAA >RE_0949_translated MPGEQTGETPTVAGVGGGGAGCSAGNSGGSSGCGAGGGGGGSGGGGGGGGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLP KYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVISSNSS PAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLLPERQEMSEAIMASEIE TGIGLKLGEDLTPRLFGVSIGVKRARREEELGAAEEEDDDRREAAAQEGEQSSDVKAEPMEENNSGNHIGSWLELGK
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1130/1131 (99.9%)（アミノ酸配列で376/377 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G11 ATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGCGGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 ATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGCGGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G11 GTGCTGGTGGTGGCGGTGGTGGTAGTGGTGGAGGTGGTGGCGGAGGAGGAGATTCACAGAGGTCAATTCCGACGCCGTTTTTGACGAAAACGTATCAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 GTGCTGGTGGTGGCGGTGGTGGTAGTGGTGGAGGTGGTGGCGGAGGAGGAGATTCACAGAGGTCAATTCCGACGCCGTTTTTGACGAAAACGTATCAGCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G11 TGTGGAAGATCCGGTTTACGACGAATTGATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGAGATCTTCTTCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 TGTGGAAGATCCGGTTTACGACGAATTGATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGAGATCTTCTTCCC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G11 AAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAATACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 AAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAATACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G11 GTTTTAAGAGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATGGCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 GTTTTAAGAGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATGGCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G11 AGCGGCTTCGGCTGTTACAGTAGCAGCTGTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCGTCTAATTCTTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 AGCGGCTTCGGCTGTTACAGTAGCAGCTGTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCGTCTAATTCTTCG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G11 CCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCTTTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 CCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCTTTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G11 AGCGATTGAGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAATATCTACACATTAATGGCGAATTTCACACCGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 AGCGATTGAGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAATATCTACACATTAATGGCGAATTTCACACCGGG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G11 TCAAGAAGATTGTGCGCATTTGTTACCTGAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATTATGGCTTCTGAAATAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 TCAAGAAGATTGTGCGCATTTGTTACCTGAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATTATGGCTTCTGAAATAGAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G11 ACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTTGTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 ACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTTGTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G11 CAGAGGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGTTAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 CAGAGGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGTTAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 AT4G11 CCATAATGGGTCGTGGCTTGAACTCGGAAAA ::::: ::::::::::::::::::::::::: RE_094 CCATATTGGGTCGTGGCTTGAACTCGGAAAA 1110 1120 1130 10 20 30 40 50 60 70 80 90 100 AT4G11 MPGEQTGETPTVAGVGGGGAGCSAGNSGGSSGCGAGGGGGGSGGGGGGGGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 MPGEQTGETPTVAGVGGGGAGCSAGNSGGSSGCGAGGGGGGSGGGGGGGGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLP 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G11 KYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVISSNSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 KYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVISSNSS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G11 PAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLLPERQEMSEAIMASEIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_094 PAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDNERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLLPERQEMSEAIMASEIE 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT4G11 TGIGLKLGEDLTPRLFGVSIGVKRARREEELGAAEEEDDDRREAAAQEGEQSSDVKAEPMEENNSGNHNGSWLELGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_094 TGIGLKLGEDLTPRLFGVSIGVKRARREEELGAAEEEDDDRREAAAQEGEQSSDVKAEPMEENNSGNHIGSWLELGK 310 320 330 340 350 360 370

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