◆◆◆RE_0950 detail◆◆◆

Code name	RE_0950
Locus	AT4G13980
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.60%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0950_1398bp ATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTTAGCGGCGGAGAAGGAGCCGGAGGACCAGCGCCTTTCTTGGTGAAAACCTACGAGATGGTCGACG ACTCATCAACGGACCAGATCGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCCGAATTTTCACGCCTCCTTCTTCCAACCTACTT CAAACACAATAACTTCTCTTCCTTCATTCGTCAGCTCAATACCTATGGGTTTAGGAAGATTGATCCAGAGAGGTGGGAGTTTTTGAATGATGATTTTATT AAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACAGCCACAGTCATCCACCTGCTTCGTCGACTGATCAAGAAAGAGCAGTGT TGCAAGAGCAAATGGACAAGCTTTCACGTGAGAAAGCTGCAATTGAAGCTAAGCTTTTAAAGTTCAAACAACAGAAGGTTGTAGCAAAGCATCAGTTTGA AGAAATGACTGAGCATGTTGATGATATGGAGAATAGGCAGAAGAAGCTGCTGAATTTTTTGGAAACTGCGATTCGGAATCCTACTTTTGTTAAGAATTTT GGTAAGAAAGTCGAGCAGTTGGATATTTCAGCTTACAACAAAAAGCGAAGGCTCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGG ATAATAGTAGTGGTAGCTCGAGACGCGAGTCTGGAAACATTTTTCATCAAAATTTCTCTAATAAATTGCGACTAGAGCTTTCTCCAGCTGATTCAGATAT GAACATGGTTTCACACAGTATACAAAGTTCCAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAATACTACACTAACAAAAAGA GAAGGCCTACCATTTGCACCTGAAGCTCTAGAGCTTGCGGATACCGGGACATGCCCGAGGAGATTACTGTTAAATGATAATACAAGGGTGGAGACCTTGC GGCAGAGGCTAACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGTTTCTGCTCCGTTACCGGACAAAACAGCTTCACA GATAGCTAAGACGACTCTTAAAAGTCAGGAGTTAAACTTTAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGATTGCAGTTGGA GGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTGGGAACAGTTCCTAACAGAAAGGCCAGGGTCTTCAGATAATGAGGAGGCAA GTTCGACTTATAGAGGTAACCCATACGAAGAGCAAGAGGAGAAAAGAAACGGGAGTATGATGTTACGTAATACAAAGAATATCGAGCAGCTGACCTTA >RE_0950_translated MNGALGNSSASVSGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFI KDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNF GKKVEQLDISAYNKKRRLPEVEQSKPPSEDSHLDNSSGSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTLTKR EGLPFAPEALELADTGTCPRRLLLNDNTRVETLRQRLTSSEETDGSFSCHLNLTLVSAPLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAVG GSQANAAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1395/1398 (99.8%)（アミノ酸配列で464/466 (99.6%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G13 ATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTTAGCGGCGGAGAAGGAGCCGGAGGACCAGCGCCTTTCTTGGTGAAAACCTACGAGATGGTCGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 ATGAACGGCGCATTAGGTAACTCCTCCGCCTCCGTTAGCGGCGGAGAAGGAGCCGGAGGACCAGCGCCTTTCTTGGTGAAAACCTACGAGATGGTCGACG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G13 ATTCATCAACGGACCAGATCGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCCGAATTTTCACGCCTCCTTCTTCCAACCTACTT : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 ACTCATCAACGGACCAGATCGTATCGTGGAGCGCTAACAACAACAGCTTCATCGTTTGGAATCATGCCGAATTTTCACGCCTCCTTCTTCCAACCTACTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G13 CAAACACAATAACTTCTCTTCCTTCATTCGTCAGCTCAATACCTATGGGTTTAGGAAGATTGATCCAGAGAGGTGGGAGTTTTTGAATGATGATTTTATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 CAAACACAATAACTTCTCTTCCTTCATTCGTCAGCTCAATACCTATGGGTTTAGGAAGATTGATCCAGAGAGGTGGGAGTTTTTGAATGATGATTTTATT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G13 AAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACAGCCACAGTCATCCACCTGCTTCGTCGACTGATCAAGAAAGAGCAGTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 AAGGATCAGAAGCATCTTCTCAAGAATATACATAGAAGGAAACCTATACACAGCCACAGTCATCCACCTGCTTCGTCGACTGATCAAGAAAGAGCAGTGT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G13 TGCAAGAGCAAATGGACAAGCTTTCACGTGAGAAAGCTGCAATTGAAGCTAAGCTTTTAAAGTTCAAACAACAGAAGGTTGTAGCAAAGCATCAGTTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 TGCAAGAGCAAATGGACAAGCTTTCACGTGAGAAAGCTGCAATTGAAGCTAAGCTTTTAAAGTTCAAACAACAGAAGGTTGTAGCAAAGCATCAGTTTGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G13 AGAAATGACTGAGCATGTTGATGATATGGAGAATAGGCAGAAGAAGCTGCTGAATTTTTTGGAAACTGCGATTCGGAATCCTACTTTTGTTAAGAATTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 AGAAATGACTGAGCATGTTGATGATATGGAGAATAGGCAGAAGAAGCTGCTGAATTTTTTGGAAACTGCGATTCGGAATCCTACTTTTGTTAAGAATTTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G13 GGTAAGAAAGTCGAGCAGTTGGATATTTCAGCTTACAACAAAAAGCGAAGGCTCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GGTAAGAAAGTCGAGCAGTTGGATATTTCAGCTTACAACAAAAAGCGAAGGCTCCCTGAAGTTGAGCAATCAAAGCCACCTTCAGAAGATTCTCATCTGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G13 ATAATAGTAGTGGTAGCTCGAGACGCGAGTCTGGAAACATTTTTCATCAAAATTTCTCTAATAAATTGCGACTAGAGCTTTCTCCAGCTGATTCAGATAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 ATAATAGTAGTGGTAGCTCGAGACGCGAGTCTGGAAACATTTTTCATCAAAATTTCTCTAATAAATTGCGACTAGAGCTTTCTCCAGCTGATTCAGATAT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G13 GAACATGGTTTCACACAGTATACAAAGTTCCAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAATACTACACTAACAAAAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GAACATGGTTTCACACAGTATACAAAGTTCCAATGAAGAAGGTGCGAGTCCCAAAGGGATACTGTCAGGAGGTGATCCAAATACTACACTAACAAAAAGA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G13 GAAGGCCTACCATTTGCACCTGAAGCTCTAGAGCTTGCGGATACCGGGACATGCCCGAGGAGATTACTGTTAAATGATAATACAAGGGTGGAGACCTTGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GAAGGCCTACCATTTGCACCTGAAGCTCTAGAGCTTGCGGATACCGGGACATGCCCGAGGAGATTACTGTTAAATGATAATACAAGGGTGGAGACCTTGC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G13 AGCAGAGGCTAACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGCTTCTGCTCCGTTACCGGACAAAACAGCTTCACA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: RE_095 GGCAGAGGCTAACTTCTTCAGAGGAGACTGATGGTAGCTTTTCATGTCATTTAAATCTAACCCTGGTTTCTGCTCCGTTACCGGACAAAACAGCTTCACA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G13 GATAGCTAAGACGACTCTTAAAAGTCAGGAGTTAAACTTTAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGATTGCAGTTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GATAGCTAAGACGACTCTTAAAAGTCAGGAGTTAAACTTTAACTCAATAGAAACAAGTGCAAGTGAGAAAAATCGGGGTAGACAAGAGATTGCAGTTGGA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G13 GGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTGGGAACAGTTCCTAACAGAAAGGCCAGGGTCTTCAGATAATGAGGAGGCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GGTAGCCAAGCAAATGCAGCTCCTCCAGCAAGAGTGAATGATGTATTCTGGGAACAGTTCCTAACAGAAAGGCCAGGGTCTTCAGATAATGAGGAGGCAA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 AT4G13 GTTCGACTTATAGAGGTAACCCATACGAAGAGCAAGAGGAGAAAAGAAACGGGAGTATGATGTTACGTAATACAAAGAATATCGAGCAGCTGACCTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GTTCGACTTATAGAGGTAACCCATACGAAGAGCAAGAGGAGAAAAGAAACGGGAGTATGATGTTACGTAATACAAAGAATATCGAGCAGCTGACCTTA 1310 1320 1330 1340 1350 1360 1370 1380 1390 10 20 30 40 50 60 70 80 90 100 AT4G13 MNGALGNSSASVSGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 MNGALGNSSASVSGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFI 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G13 KDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 KDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNF 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G13 GKKVEQLDISAYNKKRRLPEVEQSKPPSEDSHLDNSSGSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTLTKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GKKVEQLDISAYNKKRRLPEVEQSKPPSEDSHLDNSSGSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTLTKR 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G13 EGLPFAPEALELADTGTCPRRLLLNDNTRVETLQQRLTSSEETDGSFSCHLNLTLASAPLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAVG :::::::::::::::::::::::::::::::::.::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: RE_095 EGLPFAPEALELADTGTCPRRLLLNDNTRVETLRQRLTSSEETDGSFSCHLNLTLVSAPLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAVG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 AT4G13 GSQANAAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_095 GSQANAAPPARVNDVFWEQFLTERPGSSDNEEASSTYRGNPYEEQEEKRNGSMMLRNTKNIEQLTL 410 420 430 440 450 460

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