| Code name | RE_0958 | |||
|---|---|---|---|---|
| Locus | AT5G43840 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0520_20080115_0958_FR_25 | |||
| sequence |
>RE_0958_846bp ATGGATTATAACCTTCCAATTCCATTAGAGGGTCTCAAAGAAACGCCACCAACGGCTTTCTTGACGAAAACATACAACATAGTGGAGGATTCAAGCACAA ACAACATAGTTTCATGGAGCAGAGACAACAACAGCTTCATTGTTTGGGAACCAGAGACTTTTGCCCTAATTTGCCTCCCTAGATGCTTTAAGCACAATAA TTTCTCCAGCTTTGTTAGACAGCTCAATACTTATGGGTTTAAGAAGATTGATACAGAGAGATGGGAATTTGCAAATGAGCATTTTCTGAAGGGAGAGAGG CATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGTCGCTAGAAGGAGAGATCCATGAGCTGCGAGGAGACAGAATGGCTT TAGAAGTAGAACTGGTTAGACTGCGACGAAAACAAGAAAGCGTGAAGACATATCTGCATTTGATGGAAGAGAAACTGAAAGTCACAGAAGTAAAGCAAGA AATGATGATGAATTTCTTGCTAAAGAAGATTAAGAAACCGAGTTTTTTACAGAGCTTAAGGAAACGTAATCTGCAAGGAATCAAGAATCGAGAGCAAAAG CAAGAGGTGATCTCAAGCCATGGTGTTGAGGATAATGGAAAGTTTGTTAAAGCTGAGCCAGAAGAGTATGGTGATGACATCGATGATCAATGTGGAGGTG TGTTTGATTATGGTGATGAGCTTCACATAGCTTCAATGGAGCATCAAGGACAAGGGGAGGATGAAATTGAAATGGATAGTGAAGGAATTTGGAAGGGTTT CGTGTTGAGTGAGGAGGAGATGTGTGATTTAGTGGAACATTTTATA >RE_0958_translated MDYNLPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGER HLLKNIKRRKTSSQTQTQSLEGEIHELRGDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFLQSLRKRNLQGIKNREQK QEVISSHGVEDNGKFVKAEPEEYGDDIDDQCGGVFDYGDELHIASMEHQGQGEDEIEMDSEGIWKGFVLSEEEMCDLVEHFI |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 845/846 (99.9%)（アミノ酸配列で281/282 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G43 ATGGATTATAACCTTCCAATTCCATTAGAGGGTCTCAAAGAAACGCCACCAACGGCTTTCTTGACGAAAACATACAACATAGTGGAGGATTCAAGCACAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 ATGGATTATAACCTTCCAATTCCATTAGAGGGTCTCAAAGAAACGCCACCAACGGCTTTCTTGACGAAAACATACAACATAGTGGAGGATTCAAGCACAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G43 ACAACATAGTTTCATGGAGCAGAGACAACAACAGCTTCATTGTTTGGGAACCAGAGACTTTTGCCCTAATTTGCCTCCCTAGATGCTTTAAGCACAATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 ACAACATAGTTTCATGGAGCAGAGACAACAACAGCTTCATTGTTTGGGAACCAGAGACTTTTGCCCTAATTTGCCTCCCTAGATGCTTTAAGCACAATAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G43 TTTCTCCAGCTTTGTTAGACAGCTCAATACTTATGGGTTTAAGAAGATTGATACAGAGAGATGGGAATTTGCAAATGAGCATTTTCTGAAGGGAGAGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 TTTCTCCAGCTTTGTTAGACAGCTCAATACTTATGGGTTTAAGAAGATTGATACAGAGAGATGGGAATTTGCAAATGAGCATTTTCTGAAGGGAGAGAGG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G43 CATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGTCGCTAGAAGGAGAGATCCATGAGCTGCGAAGAGACAGAATGGCTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
RE_095 CATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGTCGCTAGAAGGAGAGATCCATGAGCTGCGAGGAGACAGAATGGCTT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G43 TAGAAGTAGAACTGGTTAGACTGCGACGAAAACAAGAAAGCGTGAAGACATATCTGCATTTGATGGAAGAGAAACTGAAAGTCACAGAAGTAAAGCAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 TAGAAGTAGAACTGGTTAGACTGCGACGAAAACAAGAAAGCGTGAAGACATATCTGCATTTGATGGAAGAGAAACTGAAAGTCACAGAAGTAAAGCAAGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G43 AATGATGATGAATTTCTTGCTAAAGAAGATTAAGAAACCGAGTTTTTTACAGAGCTTAAGGAAACGTAATCTGCAAGGAATCAAGAATCGAGAGCAAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 AATGATGATGAATTTCTTGCTAAAGAAGATTAAGAAACCGAGTTTTTTACAGAGCTTAAGGAAACGTAATCTGCAAGGAATCAAGAATCGAGAGCAAAAG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G43 CAAGAGGTGATCTCAAGCCATGGTGTTGAGGATAATGGAAAGTTTGTTAAAGCTGAGCCAGAAGAGTATGGTGATGACATCGATGATCAATGTGGAGGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 CAAGAGGTGATCTCAAGCCATGGTGTTGAGGATAATGGAAAGTTTGTTAAAGCTGAGCCAGAAGAGTATGGTGATGACATCGATGATCAATGTGGAGGTG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G43 TGTTTGATTATGGTGATGAGCTTCACATAGCTTCAATGGAGCATCAAGGACAAGGGGAGGATGAAATTGAAATGGATAGTGAAGGAATTTGGAAGGGTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 TGTTTGATTATGGTGATGAGCTTCACATAGCTTCAATGGAGCATCAAGGACAAGGGGAGGATGAAATTGAAATGGATAGTGAAGGAATTTGGAAGGGTTT
710 720 730 740 750 760 770 780 790 800
810 820 830 840
AT5G43 CGTGTTGAGTGAGGAGGAGATGTGTGATTTAGTGGAACATTTTATA
::::::::::::::::::::::::::::::::::::::::::::::
RE_095 CGTGTTGAGTGAGGAGGAGATGTGTGATTTAGTGGAACATTTTATA
810 820 830 840
10 20 30 40 50 60 70 80 90 100
AT5G43 MDYNLPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 MDYNLPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGER
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G43 HLLKNIKRRKTSSQTQTQSLEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFLQSLRKRNLQGIKNREQK
:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 HLLKNIKRRKTSSQTQTQSLEGEIHELRGDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFLQSLRKRNLQGIKNREQK
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT5G43 QEVISSHGVEDNGKFVKAEPEEYGDDIDDQCGGVFDYGDELHIASMEHQGQGEDEIEMDSEGIWKGFVLSEEEMCDLVEHFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_095 QEVISSHGVEDNGKFVKAEPEEYGDDIDDQCGGVFDYGDELHIASMEHQGQGEDEIEMDSEGIWKGFVLSEEEMCDLVEHFI
210 220 230 240 250 260 270 280
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