◆◆◆RE_0962 detail◆◆◆

Code name	RE_0962
Locus	AT1G27360
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0962_1179bp ATGGACTGCAACATGGTATCTTCGTCCCAGTGGGATTGGGAGCATTTGATCATGTCCAATCCGTCAAGGACTGAAGATGACAGCAAACAGCTACCTACTG AGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTTGAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACAC TACTGTATCGAAAAGCTCACAGTCGACCTCTATCAACTCGTCATCTCCCGAAGCCAAACGATGCAAGCTTGCATCAGAAAGTTCCCCTGGAGATTCTTGC AGCAACATAGATTTTGTCCAGGTGAAGGCTCCCACAGCTCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGACAT ACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTTTCTATGAAGTTGTTAACTCCATCTGTTGTCGCTGGGAAATCCAAATTGTGTGG TCAGAGCATGCCAGTCCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCGTAAGCACAAAGTCTGCGAAAAGCAT TCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCTGAATTTGATGAGAAGAAACGAA GCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAGCCACAAGGAGTATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATAC AAATATGTTGTGGAATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAATAACACTTATGATACAAAGCCTAGACAAACGGAAAAA AGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCTCTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTTCTCTACATCTCAAACCTCAGGTGGGTTCC CAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGATGTGGGAGAATACTCAGGAGTCCTCCATGAATCTCAAGATATCCGCCGTGCTCTCTCTCTTCT GTCAACCTCTTCGGATCCCCTGGCCCAACCACATGTGCAGCCATTTTCTCTACTCTGTTCATATGATGTTGTACCAAAA >RE_0962_translated MDCNMVSSSQWDWEHLIMSNPSRTEDDSKQLPTEWEIEKGEGIESIVPHFSGLERVSSGSATSFWHTTVSKSSQSTSINSSSPEAKRCKLASESSPGDSC SNIDFVQVKAPTALEVSVASAESDLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKH SKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFSMNPERVYDRRQHTNMLWNGVSLNARSEEMYEWGNNTYDTKPRQTEK SFTLSFQRGNGSEDQLVASSSRMFSTSQTSGGFPAGKSKFQLHGEDVGEYSGVLHESQDIRRALSLLSTSSDPLAQPHVQPFSLLCSYDVVPK
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1175/1179 (99.7%)（アミノ酸配列で391/393 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G27 ATGGACTGCAACATGGTATCTTCGTCCCAGTGGGATTGGGAGCATTTGATCATGTCCAATCCGTCAAGGACTGAAGATGACAGCAAACAGCTACCTACTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 ATGGACTGCAACATGGTATCTTCGTCCCAGTGGGATTGGGAGCATTTGATCATGTCCAATCCGTCAAGGACTGAAGATGACAGCAAACAGCTACCTACTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G27 AGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTTGAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 AGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATTTCTCAGGCCTTGAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G27 TGCTGTATCGAAAAGCTCACAGTCGACCTCTATCAACTCATCATCTCCCGAAGCCAAACGATGCAAGCTTGCATCAGAAAGTTCCCCTGGAGATTCTTGC : ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 TACTGTATCGAAAAGCTCACAGTCGACCTCTATCAACTCGTCATCTCCCGAAGCCAAACGATGCAAGCTTGCATCAGAAAGTTCCCCTGGAGATTCTTGC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G27 AGCAACATAGACTTTGTCCAGGTGAAGGCTCCCACAGCTCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGACAT ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 AGCAACATAGATTTTGTCCAGGTGAAGGCTCCCACAGCTCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGAAAGCGGACAT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G27 ACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTTTCTATGAAGTTGTTAACTCCATCTGTTGTCGCTGGGAAATCCAAATTGTGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 ACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTTTCTATGAAGTTGTTAACTCCATCTGTTGTCGCTGGGAAATCCAAATTGTGTGG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G27 TCAGAGCATGCCAGTCCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCGTAAGCACAAAGTCTGCGAAAAGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 TCAGAGCATGCCAGTCCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAGGGTTATCATCGTAAGCACAAAGTCTGCGAAAAGCAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G27 TCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCTGAATTTGATGAGAAGAAACGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 TCAAAGTGCCCAAAAGTTAGCGTGAGTGGCCTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCTGAATTTGATGAGAAGAAACGAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G27 GCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAGCCACAAGGAGTATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 GCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAGCCACAAGGAGTATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G27 AAATATGTTGTGGAATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAATAACACTTATGATACAAAGCCTAGACAAACGGAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 AAATATGTTGTGGAATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAATAACACTTATGATACAAAGCCTAGACAAACGGAAAAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G27 AGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCTCTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTTCTCTACATCTCAAACCTCAGGTGGGTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 AGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCTCTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTTCTCTACATCTCAAACCTCAGGTGGGTTCC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G27 CAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGATGTGGGAGAATACTCAGGAGTCCTCCATGAATCTCAAGATATCCACCGTGCTCTCTCTCTTCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: RE_096 CAGCAGGAAAGTCCAAGTTTCAACTTCATGGCGAAGATGTGGGAGAATACTCAGGAGTCCTCCATGAATCTCAAGATATCCGCCGTGCTCTCTCTCTTCT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 AT1G27 GTCAACCTCTTCGGATCCCCTGGCCCAACCACATGTGCAGCCATTTTCTCTACTCTGTTCATATGATGTTGTACCAAAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 GTCAACCTCTTCGGATCCCCTGGCCCAACCACATGTGCAGCCATTTTCTCTACTCTGTTCATATGATGTTGTACCAAAA 1110 1120 1130 1140 1150 1160 1170 10 20 30 40 50 60 70 80 90 100 AT1G27 MDCNMVSSSQWDWEHLIMSNPSRTEDDSKQLPTEWEIEKGEGIESIVPHFSGLERVSSGSATSFWHTAVSKSSQSTSINSSSPEAKRCKLASESSPGDSC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: RE_096 MDCNMVSSSQWDWEHLIMSNPSRTEDDSKQLPTEWEIEKGEGIESIVPHFSGLERVSSGSATSFWHTTVSKSSQSTSINSSSPEAKRCKLASESSPGDSC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G27 SNIDFVQVKAPTALEVSVASAESDLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 SNIDFVQVKAPTALEVSVASAESDLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKH 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G27 SKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFSMNPERVYDRRQHTNMLWNGVSLNARSEEMYEWGNNTYDTKPRQTEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 SKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFSMNPERVYDRRQHTNMLWNGVSLNARSEEMYEWGNNTYDTKPRQTEK 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT1G27 SFTLSFQRGNGSEDQLVASSSRMFSTSQTSGGFPAGKSKFQLHGEDVGEYSGVLHESQDIHRALSLLSTSSDPLAQPHVQPFSLLCSYDVVPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: RE_096 SFTLSFQRGNGSEDQLVASSSRMFSTSQTSGGFPAGKSKFQLHGEDVGEYSGVLHESQDIRRALSLLSTSSDPLAQPHVQPFSLLCSYDVVPK 310 320 330 340 350 360 370 380 390

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