◆◆◆RE_0963 detail◆◆◆

Code name	RE_0963
Locus	AT1G27370
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0963_1188bp ATGGACTGCAACATGGTATCTTCGTTCCCGTGGGACTGGGAGAATTTGATCGTGTCCAATCAGTCGAAGACTGAAAATGAAAAAAAACAGCAATCTACTG AGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTCTTAGGCTTTGAGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACAC TGCCGTATCAAAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTTGCATCACAAAGTTCCCCTGGAGATTCTCCC AGCAACATAGATTTTCTCCAGGTGAAACCATCCACAGCTCTCGAGGTACCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGAAAGCGGACAT ACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCTATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTG TGGTCAGAGCATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGATTATCATCGCAAGCATAGAGTCTGCGAAACG CATTCAAAGTGCCCAAAAGTTGTTGTGAGTGGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCAGAATTTGATGAAAAGAAAC GAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCACAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTTCGATCGAAGACAGCA TACAAGTATGTTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATACATGGGGTACCACTTATGAGACAAAGCCTACACAGATGGAAAGC GGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCTCTGAGGACCAACTGTTTACTGGTAGCACCCTCTCTTTCTCTGCGTTTCAAACATCTGGTGGGTTCT CAGCAGGGAAATCCAACATTCAACTTCCAGACAAAGGTGTGGGAGAATGCTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCT GTCAACTACTTCGGATTCACAAGGGATCAAACACACTCCCGTGGCCGAACCACCGCCAATATTTGGCACTTTCCCTAGTCATTTCATC >RE_0963_translated MDCNMVSSFPWDWENLIVSNQSKTENEKKQQSTEWEFEKGEGIESIVPDFLGFEKVSSGSATSFWHTAVSKSSQSTSINSSSPEDKRCNLASQSSPGDSP SNIDFLQVKPSTALEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCET HSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFPLNSERVFDRRQHTSMLWNGLSLNTRSEEKYTWGTTYETKPTQMES GFTLSFQRGNGSEDQLFTGSTLSFSAFQTSGGFSAGKSNIQLPDKGVGECSGGLHESHDFYSALSLLSTTSDSQGIKHTPVAEPPPIFGTFPSHFI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1186/1188 (99.8%)（アミノ酸配列で394/396 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G27 ATGGACTGCAACATGGTATCTTCGTTCCCGTGGGACTGGGAGAATTTGATCATGTCCAATCAGTCGAAGACTGAAAATGAAAAAAAACAGCAATCTACTG ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: RE_096 ATGGACTGCAACATGGTATCTTCGTTCCCGTGGGACTGGGAGAATTTGATCGTGTCCAATCAGTCGAAGACTGAAAATGAAAAAAAACAGCAATCTACTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G27 AGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTCTTAGGCTTTGAGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 AGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTCTTAGGCTTTGAGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G27 TGCCGTATCAAAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTTGCATCACAAAGTTCCCCTGGAGATTCTTCC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: RE_096 TGCCGTATCAAAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTTGCATCACAAAGTTCCCCTGGAGATTCTCCC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G27 AGCAACATAGATTTTCTCCAGGTGAAACCATCCACAGCTCTCGAGGTACCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGAAAGCGGACAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 AGCAACATAGATTTTCTCCAGGTGAAACCATCCACAGCTCTCGAGGTACCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGAAAGCGGACAT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G27 ACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCTATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 ACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCTATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G27 TGGTCAGAGCATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGATTATCATCGCAAGCATAGAGTCTGCGAAACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 TGGTCAGAGCATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGATTATCATCGCAAGCATAGAGTCTGCGAAACG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G27 CATTCAAAGTGCCCAAAAGTTGTTGTGAGTGGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCAGAATTTGATGAAAAGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 CATTCAAAGTGCCCAAAAGTTGTTGTGAGTGGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCAGAATTTGATGAAAAGAAAC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G27 GAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCACAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTTCGATCGAAGACAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 GAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCACAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTTCGATCGAAGACAGCA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G27 TACAAGTATGTTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATACATGGGGTACCACTTATGAGACAAAGCCTACACAGATGGAAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 TACAAGTATGTTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATACATGGGGTACCACTTATGAGACAAAGCCTACACAGATGGAAAGC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G27 GGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCTCTGAGGACCAACTGTTTACTGGTAGCACCCTCTCTTTCTCTGCGTTTCAAACATCTGGTGGGTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 GGCTTTACTCTGAGCTTCCAGAGAGGTAATGGCTCTGAGGACCAACTGTTTACTGGTAGCACCCTCTCTTTCTCTGCGTTTCAAACATCTGGTGGGTTCT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G27 CAGCAGGGAAATCCAACATTCAACTTCCAGACAAAGGTGTGGGAGAATGCTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 CAGCAGGGAAATCCAACATTCAACTTCCAGACAAAGGTGTGGGAGAATGCTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 AT1G27 GTCAACTACTTCGGATTCACAAGGGATCAAACACACTCCCGTGGCCGAACCACCGCCAATATTTGGCACTTTCCCTAGTCATTTCATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 GTCAACTACTTCGGATTCACAAGGGATCAAACACACTCCCGTGGCCGAACCACCGCCAATATTTGGCACTTTCCCTAGTCATTTCATC 1110 1120 1130 1140 1150 1160 1170 1180 10 20 30 40 50 60 70 80 90 100 AT1G27 MDCNMVSSFPWDWENLIMSNQSKTENEKKQQSTEWEFEKGEGIESIVPDFLGFEKVSSGSATSFWHTAVSKSSQSTSINSSSPEDKRCNLASQSSPGDSS :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 MDCNMVSSFPWDWENLIVSNQSKTENEKKQQSTEWEFEKGEGIESIVPDFLGFEKVSSGSATSFWHTAVSKSSQSTSINSSSPEDKRCNLASQSSPGDSP 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G27 SNIDFLQVKPSTALEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 SNIDFLQVKPSTALEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCET 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G27 HSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFPLNSERVFDRRQHTSMLWNGLSLNTRSEEKYTWGTTYETKPTQMES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 HSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQGVFPLNSERVFDRRQHTSMLWNGLSLNTRSEEKYTWGTTYETKPTQMES 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT1G27 GFTLSFQRGNGSEDQLFTGSTLSFSAFQTSGGFSAGKSNIQLPDKGVGECSGGLHESHDFYSALSLLSTTSDSQGIKHTPVAEPPPIFGTFPSHFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_096 GFTLSFQRGNGSEDQLFTGSTLSFSAFQTSGGFSAGKSNIQLPDKGVGECSGGLHESHDFYSALSLLSTTSDSQGIKHTPVAEPPPIFGTFPSHFI 310 320 330 340 350 360 370 380 390

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