◆◆◆RE_0972 detail◆◆◆

Code name	RE_0972
Locus	AT5G43270
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0972_1257bp ATGGAGTGTAATGCAAAGCCACCGTTTCAATGGGAATTGGAAAACTTGATATCTTTTGGCACTTCTACAGCTGAAGTTCCTAGAAAGCTAAAACCAATGG AGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCCTATGCTGGTAGTTCGGGTTCTGATATAGCTCATGCTTTCTCTAAAAG CTCAAAGTCAACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGGTGAAAGTCTTCCTGGAGAATTTGCAAGGGGG ATTGATACTTCTCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAAACGAACGTACTTTGAAGACTTTTGGGAAG TGGAGAATGCTAAAGGTTTGGGACTTCCAGTGACTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGTTACAAACTCC TCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACTATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTC GTTGTGAGTGGCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATGAGAAGAAACGTAGCTGTCGCCGACGTCTCT CAGATCACAATGCAAGACGTCGCAAGCCAAATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCACTTATCCATCC AAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAAGAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATACCGAGCAC AATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAGAAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAG ATCTTGATGGTGCTCTCTCTCTTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTGATCACCATCCCTCAAGCAA CCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATTCAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCAT AGAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAAC >RE_0972_translated MECNAKPPFQWELENLISFGTSTAEVPRKLKPMEWEIDGFDCTSLYSSSFAYAGSSGSDIAHAFSKSSKSTSISSSSAEVRTHNFTSETGESLPGEFARG IDTSPSLELSFGSGDPVLGLKLGKRTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKV VVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNPGRTYDGKPQVDFVWNRFALIHPRSEEKFIWPSSKHVPSRVLMPQPAKTEISDTEH NRFGLLDPKTKTARAELFSKEKVTISSHMGASQDLDGALSLLSNSTTWVSSSDQPRRFTLDHHPSSNLQPVAHRSAAQLNSVSGYWQPDPPAVEGPTALH RNGVGQFNENYFSLNQFYN
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1255/1257 (99.8%)（アミノ酸配列で418/419 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G43 ATGGAGTGTAATGCAAAGCCACCGTTTCAATGGGAATTGGAAAACTTGATATCTTTTGGCACTTCTACAGCTGAAGTTCCTAGAAAGCTAAAACCAATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 ATGGAGTGTAATGCAAAGCCACCGTTTCAATGGGAATTGGAAAACTTGATATCTTTTGGCACTTCTACAGCTGAAGTTCCTAGAAAGCTAAAACCAATGG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G43 AGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCCTATGCTGGTAGTTCAGGTTCTGATATAGCTCATGCTTTCTCTAAAAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: RE_097 AGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCCTATGCTGGTAGTTCGGGTTCTGATATAGCTCATGCTTTCTCTAAAAG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G43 CTCAAAGTCAACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGGTGAAAGTCTTCCTGGAGAATTTGCAAAGGGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: RE_097 CTCAAAGTCAACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGGTGAAAGTCTTCCTGGAGAATTTGCAAGGGGG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G43 ATTGATACTTCTCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAAACGAACGTACTTTGAAGACTTTTGGGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 ATTGATACTTCTCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAAACGAACGTACTTTGAAGACTTTTGGGAAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G43 TGGAGAATGCTAAAGGTTTGGGACTTCCAGTGACTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGTTACAAACTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 TGGAGAATGCTAAAGGTTTGGGACTTCCAGTGACTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGTTACAAACTCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G43 TCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACTATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 TCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACTATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G43 GTTGTGAGTGGCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATGAGAAGAAACGTAGCTGTCGCCGACGTCTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 GTTGTGAGTGGCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATGAGAAGAAACGTAGCTGTCGCCGACGTCTCT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G43 CAGATCACAATGCAAGACGTCGCAAGCCAAATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCACTTATCCATCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 CAGATCACAATGCAAGACGTCGCAAGCCAAATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCACTTATCCATCC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G43 AAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAAGAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATACCGAGCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 AAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAAGAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATACCGAGCAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G43 AATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAGAAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 AATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAGAAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G43 ATCTTGATGGTGCTCTCTCTCTTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTGATCACCATCCCTCAAGCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 ATCTTGATGGTGCTCTCTCTCTTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTGATCACCATCCCTCAAGCAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G43 CCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATTCAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 CCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATTCAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCAT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 AT5G43 AGAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAAC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 AGAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAAC 1210 1220 1230 1240 1250 10 20 30 40 50 60 70 80 90 100 AT5G43 MECNAKPPFQWELENLISFGTSTAEVPRKLKPMEWEIDGFDCTSLYSSSFAYAGSSGSDIAHAFSKSSKSTSISSSSAEVRTHNFTSETGESLPGEFAKG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: RE_097 MECNAKPPFQWELENLISFGTSTAEVPRKLKPMEWEIDGFDCTSLYSSSFAYAGSSGSDIAHAFSKSSKSTSISSSSAEVRTHNFTSETGESLPGEFARG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G43 IDTSPSLELSFGSGDPVLGLKLGKRTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 IDTSPSLELSFGSGDPVLGLKLGKRTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKV 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G43 VVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNPGRTYDGKPQVDFVWNRFALIHPRSEEKFIWPSSKHVPSRVLMPQPAKTEISDTEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 VVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNPGRTYDGKPQVDFVWNRFALIHPRSEEKFIWPSSKHVPSRVLMPQPAKTEISDTEH 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G43 NRFGLLDPKTKTARAELFSKEKVTISSHMGASQDLDGALSLLSNSTTWVSSSDQPRRFTLDHHPSSNLQPVAHRSAAQLNSVSGYWQPDPPAVEGPTALH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_097 NRFGLLDPKTKTARAELFSKEKVTISSHMGASQDLDGALSLLSNSTTWVSSSDQPRRFTLDHHPSSNLQPVAHRSAAQLNSVSGYWQPDPPAVEGPTALH 310 320 330 340 350 360 370 380 390 400 410 AT5G43 RNGVGQFNENYFSLNQFYN ::::::::::::::::::: RE_097 RNGVGQFNENYFSLNQFYN 410

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